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Name : vipB (EcE24377A_2324) Accession : YP_001463384.1 Strain : Escherichia coli E24377A Genome accession: NC_009801 Putative virulence/resistance : Virulence Product : VI polysaccharide biosynthesis protein vipB/tviC Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0451 EC number : - Position : 2287268 - 2288299 bp Length : 1032 bp Strand : - Note : identified by similarity to SP:Q04973; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 DNA sequence : ATGACTAGATATGAAAAAACTATTGAGCAATTAAAAGTTAAACCTAAGACTTGGTTGATAACAGGAGTTGCTGGCTTCAT TGGCTCAAATTTACTTGAAACACTTTTAAGATTAAATCAGACAGTAGTTGGTTTGGATAATTTTGCTACAGGACATCAGC GAAATCTTGATGAAGTCCAGCAAAACGTTACACCTGAAGCATGGCAAAAATTTACAATGATCGAAGGTGATATACGTGAT TATGAGACATGTATGAAGGCCGTTGATAATGTTAACTACGTATTGCACCAGGCTGCACTTGGTTCAGTGCCTCGTTCAAT TAATGATCCTATAACAACTAATGAAGTTAATGTCTCTGGCTTCTTGAATATGTTACAAGCTGCCAAGTGTAGAGATGTAG AGAGTTTTGTTTTTGCCGCTTCAAGTTCAACATATGGTGATCATACCGCTCTGCCCAAAATAGAACATACAATTGGTAAA CCATTATCTCCCTATGCTATCACAAAATATGTAAATGAATTATATGCGGAAGTTTTCGCAAAAATGTATGGTTTTAAAAG CATTGGTTTGAGATATTTCAATGTCTTTGGTAAAAGGCAAGATCCAAATGGTGCATATGCAGCAGTAATACCCAAATGGA TATCGGCAATGCTCATGGATAAAGATATTTATATCAATGGTGATGGGGAAACTAGTAGAGATTTTTCATTTATTGAAAAT ACTGTTCAAATGAATATTCTTGCTGCTACAGCAGATGATAGTGCAAAAGGAGAAGTTTACAACGTTGCTTATGGTGAGAG AACATCATTAAACGAATTAGTTGAATTTATAAAAAATGACCTTGGCAGTAATGGAATAAAATATGCAGGGAATATTATAT ATCGGGATTTCAGAAAAGGTGATGTGAGACATTCTCTAGCTGATATTAGTAAAGCTAGAGAAATGCTCGGCTATCAACCT CAGTTTGATATTAAAACTGGTTTAAGACAGGCAATGCCCTGGTATATAAACTTATTTAAAAAAGCAGAATGA Protein sequence : MTRYEKTIEQLKVKPKTWLITGVAGFIGSNLLETLLRLNQTVVGLDNFATGHQRNLDEVQQNVTPEAWQKFTMIEGDIRD YETCMKAVDNVNYVLHQAALGSVPRSINDPITTNEVNVSGFLNMLQAAKCRDVESFVFAASSSTYGDHTALPKIEHTIGK PLSPYAITKYVNELYAEVFAKMYGFKSIGLRYFNVFGKRQDPNGAYAAVIPKWISAMLMDKDIYINGDGETSRDFSFIEN TVQMNILAATADDSAKGEVYNVAYGERTSLNELVEFIKNDLGSNGIKYAGNIIYRDFRKGDVRHSLADISKAREMLGYQP QFDIKTGLRQAMPWYINLFKKAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tviC | NP_458739.1 | Vi polysaccharide biosynthesis protein, epimerase | Virulence | SPI-7 | Protein | 2e-103 | 63 |
| tviC | NP_807944.1 | VI polysaccharide biosynthesis epimerase | Virulence | SPI-7 | Protein | 2e-103 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| vipB | YP_001463384.1 | VI polysaccharide biosynthesis protein vipB/tviC | VFG0430 | Protein | 1e-103 | 63 |
