Gene Information

Name : EcHS_A0345 (EcHS_A0345)
Accession : YP_001457116.1
Strain : Escherichia coli HS
Genome accession: NC_009800
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 355726 - 356325 bp
Length : 600 bp
Strand : -
Note : identified by glimmer

DNA sequence : 
ATGCAAACTTATAACACCAATCCCGCTTACGAAATGGCTCCCCAGCTCCTGGAGCACTTTAACCAGCATCTGGATTCATT
ATTCGGGGTCTATTCGAAACTGTTACCGTTCAGAATGGATTTTGCTTACCGAAAAAACACCCTCAGCTACAGATGTGCCT
GCAGGTACGCCATGTGCGCGGAGATGCTGCAACTGATTAACGAGGTGGGAGAGAAACTGGTCGGGTATGCCTGGGTGATG
GAATATACAGAACGTAAAGGGCTTCACATTCATTTTGTGGGCTATCTGAACGGCCAGAGCCACAGGAGTTCGTATCTGGT
ATCCAGATTGATGGGAGATATCTGGAGGCGGGTTACCGAGGGTAATGGTTACTACCACTGGTGCCGGTTTAATAAAAATT
ATCCGGTAAACATTAACCACGTCATTCACTATTCAGATCACAAAGCGGTGAATGATTTACGCTATGCCATCAGCTACCTG
GCCAAACGGGAACAGAAAGAATGTGGCATCATCCTGAAATGCAGCGGGCTTCCTGAAAAAAGTAACCGGGGTCGACCACG
ACTGGACAGCCCCCTGCCGGGGATATGTGCTCTGGTGTAA

Protein sequence : 
MQTYNTNPAYEMAPQLLEHFNQHLDSLFGVYSKLLPFRMDFAYRKNTLSYRCACRYAMCAEMLQLINEVGEKLVGYAWVM
EYTERKGLHIHFVGYLNGQSHRSSYLVSRLMGDIWRRVTEGNGYYHWCRFNKNYPVNINHVIHYSDHKAVNDLRYAISYL
AKREQKECGIILKCSGLPEKSNRGRPRLDSPLPGICALV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SF2982 NP_708756.1 hypothetical protein Not tested SHI-1 Protein 1e-92 100
S3187 NP_838470.1 hypothetical protein Not tested SHI-1 Protein 1e-92 100
unnamed CAE85184.1 hypothetical protein Not tested PAI V 536 Protein 3e-83 95
Z1128 NP_286663.1 hypothetical protein Not tested TAI Protein 9e-58 64
Z1567 NP_287071.1 hypothetical protein Not tested TAI Protein 9e-58 64
unnamed AAL08430.1 unknown Not tested SRL Protein 1e-55 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcHS_A0345 YP_001457116.1 hypothetical protein VFG0646 Protein 4e-93 100
EcHS_A0345 YP_001457116.1 hypothetical protein VFG1021 Protein 5e-56 61