Gene Information

Name : EcHS_A0329 (EcHS_A0329)
Accession : YP_001457101.1
Strain : Escherichia coli HS
Genome accession: NC_009800
Putative virulence/resistance : Unknown
Product : site-specific recombinase, phage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 333837 - 335045 bp
Length : 1209 bp
Strand : +
Note : identified by match to protein family HMM PF00589

DNA sequence :
ATGAAACTTAATGCGCGACAGGTAGACGCAGCTAAACCCAGAGAGAAAGCCTATAAGCTGGCAGATGGTGCTGGTTTGTA
TCTTGAGGTTGTTCCCTCTGGTTCCAGATACTGGCGGATGAAATATCGCTTCAATGGAAAAGAGAAGCGTATGGCCTTTG
GTGTCTATCCGGCAGTGTCCCTTGCACAAGCGAGGGCACTGCGTGACGACGCCAAGAAAAAGCTTGCCGAAGGTATCGAT
CCATCGCTTGCCAAGAAAGAAGAAAAGCTGGTTCGAGATGTGCAGCTAAATAATACGTTTCAGGCTGTGGCACTTGAATG
GCATGGAACGAAGGTGAGCCGATGGTCAGAAGGTTATGCCTCGGACATTATCGAAGCCTTTAATAAAGATATTTTTCCCT
ATATTGGCCAACAACCGGTGAATGAAATCAAACCGCTGGTTCTGCTTAATGTGCTGCGTCGAATTGAAAGCCGTGGCGCG
ACAGAGAAGGCCAAGAAGGTTCGCCAGCGTTGCAGCGAAGTCTTTCGTTACGCCATCGTAACCGGTCGTGCGGAATACAA
TCCTGCAGCGGATCTTACCAGCGCGATGTCAGGGCATGAATCGAAGCATTATCCCTTCCTTACTGTTGAGGAGTTACCAG
ACTTTTTTAAAGCTCTCGCAGGCTACACAGGAAGCCCGTTAGTTGTTCTTGCGGCACGTCTGCTGATCCTCACGGGAGTT
CGCACTGGCGAACTCCGAGGTGCTTTCTGGAGTGAGTTTGATCTTGAAAAAGCGGTGTGGGAGATACCTGCCGAGCGTAT
GAAGATGAAACGGCCTCACCTTGTCCCCCTCTCTACCCAAGCGCTGGAAATCGTACAGCAACTCAAAGTGATGTCAGGGC
AATATCCACTGGTGTTCCCGGGACGTAATGATCCCCGCAAGACGATGAGTGAAGCGAGTATTAATCAGGTTTTTAAGCGG
ATTGGATATACGGGGAGGGTAACGGGGCATGGTTTCCGTCACACGATGAGTACGATTTTGCATGAGGAAGGTTTCAATAC
AGCGTGGATTGAAACCCAGCTGGCTCACGTTGATAAAAATGCGATTCGTGGGACGTATAACCATGCGTTGTATTTGGAAG
GACGTAGGGAGATGATGCAGTGGTATGCGGACTATATAAACGCTAATCATAATTCATGTATTTCTTTGCTGGTGAACGCT
ACAAAGTAG

Protein sequence :
MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVSLAQARALRDDAKKKLAEGID
PSLAKKEEKLVRDVQLNNTFQAVALEWHGTKVSRWSEGYASDIIEAFNKDIFPYIGQQPVNEIKPLVLLNVLRRIESRGA
TEKAKKVRQRCSEVFRYAIVTGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLLILTGV
RTGELRGAFWSEFDLEKAVWEIPAERMKMKRPHLVPLSTQALEIVQQLKVMSGQYPLVFPGRNDPRKTMSEASINQVFKR
IGYTGRVTGHGFRHTMSTILHEEGFNTAWIETQLAHVDKNAIRGTYNHALYLEGRREMMQWYADYINANHNSCISLLVNA
TK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-142 71
int AAC31482.1 CP4-like integrase Not tested LEE Protein 9e-127 64
int ACU09430.1 integrase Not tested LEE Protein 9e-127 64
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-126 64
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-126 64
int CAC39282.1 integrase Not tested LPA Protein 2e-128 64
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-128 64
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 6e-127 64
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-127 64
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 6e-127 64
int AAD44730.1 Int Not tested SHI-2 Protein 5e-127 63
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-126 63
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-77 44
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-79 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-79 43
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 5e-76 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-78 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-78 42
intA AAB00935.1 integrase A Not tested vap locus Protein 6e-64 42
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 1e-78 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-79 42
int AAN62223.1 putative integrase Not tested PAGI-3(SG) Protein 5e-64 42
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 6e-78 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 3e-78 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 6e-78 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-77 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 7e-78 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-78 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-77 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-78 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-77 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-77 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-77 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-77 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-77 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-77 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcHS_A0329 YP_001457101.1 site-specific recombinase, phage integrase VFG0783 Protein 5e-127 64
EcHS_A0329 YP_001457101.1 site-specific recombinase, phage integrase VFG0598 Protein 2e-127 64
EcHS_A0329 YP_001457101.1 site-specific recombinase, phage integrase VFG1693 Protein 6e-80 42
EcHS_A0329 YP_001457101.1 site-specific recombinase, phage integrase VFG0626 Protein 2e-78 41