|
Name : gspC1 (EcHS_A3139) Accession : YP_001459757.1 Strain : Escherichia coli HS Genome accession: NC_009800 Putative virulence/resistance : Virulence Product : type II secretion protein GspC Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG3031 EC number : - Position : 3149011 - 3149970 bp Length : 960 bp Strand : - Note : part of the general (type II) secretion pathway (GSP), a signal sequence-dependent process responsible for protein export; involved in trans-location of exoproteins from the cytoplasm to the periplasm DNA sequence : TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACAAAAATTCGTCACACTCTTAACCAGAG ACAATCTCTTAATACAGACAAAGAGCATCTGCGCAAAATTGCACGCGGGATGTTCTGGCTGATGCTGCTTATTATTTCTG CAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCTGTTTCCCCATCGGCGAATAAACCG CCCCGTGCGGATGCAAAAACGTTCGATAAAAATGACGTGCAATTAATCAGCCAGCAAAACTGGTTTGGCAAATATCAGCC CGTCGCCACGCCGGTAAAACAACCCGAACCTGTGCCTGTGGCAGAAACGCGTCTTAATGTGGTGTTGCGTGGGATCGCCT TTGGTGCCAGACCCGGCGCGGTTATTGAAGAAGGTGGCAAACAGCAGGTCTATTTGCAGGGGGAACGGCTTGGTTCTCAC AACGCGGTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATCAGGGAAAAATAGAGCGCCTGAGCCTGGCAGA AGAGGGGCATTCCACCGTAGCCGTGACCAACAAAAAAGCCGTCAGTGACGAAGCAAAGCAAGCTGTTGCTGAGCCTGCTG CCAGTGCGCCAGTTGAGATCCCGACTGCCGTGCGTCAGGCACTGACGAAAGATCCGCAGAAAATTTTTAACTATATCCAG CTTACGCCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGTGAAGCCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGG TTTCAAGGAAGGCGATATCGCCATTGCGCTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGC AGTTACCTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCCACGACATTTCCATCGCGCTGCGCTAA Protein sequence : MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTDKEHLRKIARGMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSPSANKP PRADAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSH NAVIEEINRDHVMLRYQGKIERLSLAEEGHSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPTAVRQALTKDPQKIFNYIQ LTPVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIALR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspC | CAE85235.1 | GspC, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 4e-116 | 96 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspC1 | YP_001459757.1 | type II secretion protein GspC | VFG2046 | Protein | 5e-116 | 94 |
