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Name : gspF2 (EcHS_A3136) Accession : YP_001459754.1 Strain : Escherichia coli HS Genome accession: NC_009800 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 3144205 - 3145428 bp Length : 1224 bp Strand : - Note : identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120 DNA sequence : ATGGCACTGTTTTACTATCAGGCGCTGGAGCGTAATGGTCGCAAAACCAAAGGTATGATTGAGGCGGATTCCGCGCGTCA TGCCCGCCAGTTGTTGCGCGGTAAAGAGCTTATCCCCGTGCATATTGAAGCCCGGATGAATACTTCGTCAGGGGGGATGT TGCAGCGTCGGCGGCACGCACATCGTCGCGTGGCGGCGGCAGATCTTGCGCTGTTCACGCGCCAACTGGCAACGCTGGTA CAGGCAGCAATGCCGCTGGAAACCTGCTTACAGGCGGTCAGTGAGCAAAGTGAAAAACTGCATGTAAAAAGCCTCGGAAT GGCGCTGCGCAGCCGGATTCAGGAAGGTTACACCCTGTCGGACAGCCTGCGCGAACATCCCCGCGTCTTTGATTCTCTGT TTTGTTCGATGGTTGCTGCCGGAGAAAAATCCGGGCATCTCGACGTGGTGCTCAATCGCCTGGCAGATTACACCGAACAG CGACAGCGCCTGAAATCACGTCTATTGCAGGCCATGCTCTATCCGCTGGTTCTGCTGGTGGTGGCAACGGGCGTAGTCAC TATTTTGCTGACGGCAGTGGTGCCGAAAATCATCGAACAGTTCGATCACCTCGGACACGCGCTGCCCGCCACCACCCGCG CGCTTATCGCCATGAGCGACGCGTTACAGGCCAGCGGCGTTTACTGGCTGGCGGGATTGCTGGCGCTTCTGGTGCTGGGG CAACGGCTACTTAAAAATCCTGCTATGCGCCTGCGCCGGGATAAAACCTTGCTGCGTCTGCCCGTGACGGGCCGTGTTGC GCGCGGGCTGAATACGGCGCGTTTTTCCCGCACATTAAGCATCCTCACCGCCAGCAGTGTTCCGCTACTGGAAGGCATTC AGACCGCTGCCGCCGTGTCGGCAAATCGCTATGTCGAACAACAACTACTGCTGGCGGCAGATCGCGTCCGCGAAGGAAGC AGTCTGCGTGCCGCGCTGGCGGAGTTGCGCCTGTTCCCCCCGATGATGCTGTACATGATCGCCTCCGGCGAACAGAGCGG CGAACTGGAAACCATGCTTGAGCAGGCCGCTGTTAACCAGGAACGGGAATTTGATACCCAGGTGGGGCTGGCGTTAGGGC TGTTTGAACCGGCGCTGGTGGTGATGATGGCGGGCGTGGTGCTGTTTATCGTCATCGCCATCCTCGAGCCGATGCTGCAA CTGAACAATATGGTTGGAATGTAA Protein sequence : MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARMNTSSGGMLQRRRHAHRRVAAADLALFTRQLATLV QAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ RQRLKSRLLQAMLYPLVLLVVATGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYWLAGLLALLVLG QRLLKNPAMRLRRDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGS SLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQ LNNMVGM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 2e-153 | 98 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-153 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF2 | YP_001459754.1 | general secretion pathway protein F | VFG2049 | Protein | 5e-148 | 98 |
| gspF2 | YP_001459754.1 | general secretion pathway protein F | VFG0181 | Protein | 9e-68 | 46 |
