Gene Information

Name : EcHS_A2138 (EcHS_A2138)
Accession : YP_001458810.1
Strain : Escherichia coli HS
Genome accession: NC_009800
Putative virulence/resistance : Virulence
Product : GTPase
Function : -
COG functional category : R : General function prediction only
COG ID : COG3596
EC number : -
Position : 2118921 - 2119793 bp
Length : 873 bp
Strand : +
Note : identified by match to protein family HMM PF01926

DNA sequence :
ATGAATCCGTCTGATGCCATTGAGGCAATTGAAAAACCGCTCTCCTCCCTGCCTTACTCACTTTCCCGTCACATCCTGGA
ACATCTGCGCAAACTCACCAGTCACGAACCCGTGATTGGCATTATGGGTAAAAGCGGGGCCGGTAAATCCTCACTCTGTA
ATGCACTGTTTCAGGGGGAGGTCACCCCGGTCAGTGATGTTCACGCCGGCACCAGGGAAGTGCAGCGCTTCCGTCTGAGT
GGCCATGGTCACAGCATGGTTATCACTGACCTGCCCGGGGTGGGCGAGAGCCGGGACAGGGATGCAGAGTATGAAGCCCT
GTACCGTGACATTCTGCCTGAACTTGACCTGGTACTGTGGCTGATTAAAGCCGATGACCGTGCCCTGTCTGTGGATGAGT
ATTTCTGGCGACACATCCTGCACCGGGGACATCAGCAGGTGCTGTTTGTGGTGACGCAGGCCGACAAAACGGAGCCCTGC
CATGAATGGGATATGGCCGGCATTCAGCCTTCTCCCGCACAGGCACAGAACATTCGGGAGAAAACGGAGGCGGTATTCCG
TCTGTTCCGGCCCGTACATCCGGTTGTTGCCGTATCGGCCCGCACCGGCTGGGAACTGGATACGCTGGTCAGTGCGCTCA
TGACAGCGCTTCCCGACCATGCCGCCAGTCCCCTGATGACCCGCCTGCAGGACGAGCTGCGCACGGAATCTGTCCGCGCT
CAGGCCCGTGAACAGTTTACCGGTGCGGTGGACCGGATATTTGACACGGCGGAGAGCGTCTGTGTTGCCTCTGTTGCCCG
TACGGTTCTGCGTGCCGTCCGTGACACGGTGGTCTCTGTTGCCCGCGCTGTATGGAACTGGATTTTCTTCTGA

Protein sequence :
MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLS
GHGHSMVITDLPGVGESRDRDAEYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQADKTEPC
HEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRA
QAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDTVVSVARAVWNWIFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08471.1 unknown Not tested SRL Protein 6e-135 99
ECO103_3582 YP_003223441.1 hypothetical protein Not tested LEE Protein 7e-134 99
unnamed CAD66199.1 hypothetical protein Not tested PAI III 536 Protein 1e-133 99
aec64 AAW51747.1 Aec64 Not tested AGI-3 Protein 5e-134 99
yeeP ADD91709.1 YeeP Not tested PAI-I AL862 Protein 5e-134 99
sap NP_838477.1 hypothetical protein Not tested SHI-1 Protein 2e-132 98
unnamed AAK00473.1 unknown Not tested SHI-1 Protein 5e-132 98
Z1210 NP_286745.1 histone Not tested TAI Protein 1e-131 98
Z1650 NP_287153.1 hypothetical protein Not tested TAI Protein 1e-131 98
sap NP_708764.1 hypothetical protein Not tested SHI-1 Protein 6e-132 98
yeeP CAE85196.1 YeeP protein Not tested PAI V 536 Protein 9e-134 98
unnamed AAL99256.1 unknown Not tested LEE Protein 3e-132 97
APECO1_1093 YP_853113.1 hypothetical protein Not tested PAI IV APEC-O1 Protein 8e-132 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcHS_A2138 YP_001458810.1 GTPase VFG1674 Protein 7e-134 99
EcHS_A2138 YP_001458810.1 GTPase VFG1062 Protein 3e-135 99
EcHS_A2138 YP_001458810.1 GTPase VFG0654 Protein 3e-132 98