Gene Information

Name : EcHS_A2121 (EcHS_A2121)
Accession : YP_001458799.1
Strain : Escherichia coli HS
Genome accession: NC_009800
Putative virulence/resistance : Unknown
Product : IS66 family orf1
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2963
EC number : -
Position : 2106943 - 2107368 bp
Length : 426 bp
Strand : +
Note : identified by match to protein family HMM PF01527

DNA sequence :
ATGGAATTACAGGACTGGCGAAAAGAACCTCGTAAAAACTATTCGAATGAATTCAAACTTCGTATGGTGGAACTGGCATC
ACAACCTGGAGCTTGTGTTGCACAGATTGCACGTGAAAATGACGTCAATGATAATGTTATTTTCAAATGGCTCAGGCTCT
GGCAGAACGAAGGGCGTGTTTCGCGGCGTCTTCCGGTAACGACCTCTTCTGACACTGGCGTTGAATTATTACCTGTAGAA
ATAACGCCGGATGAGCAGAAAGAACCTGTGGCGGCCATTGCGCCGTCTTTATCCACTTCCACTCAGACCAGAGTCAGTGC
CAGTTCCTGCAAGGTGGAATTCCGTCACGGTAACATGACGCTGGAAAATCCATCGCCAGAGCTGCTCACAGTGTTGATCC
GTGAACTGACCGGGAGGGGAAGATGA

Protein sequence :
MELQDWRKEPRKNYSNEFKLRMVELASQPGACVAQIARENDVNDNVIFKWLRLWQNEGRVSRRLPVTTSSDTGVELLPVE
ITPDEQKEPVAAIAPSLSTSTQTRVSASSCKVEFRHGNMTLENPSPELLTVLIRELTGRGR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO103_3566 YP_003223429.1 hypothetical protein Not tested LEE Protein 4e-60 97
Z1208 NP_286743.1 hypothetical protein Not tested TAI Protein 1e-57 93
Z1648 NP_287151.1 hypothetical protein Not tested TAI Protein 5e-57 92
unnamed CAD66197.1 hypothetical protein Not tested PAI III 536 Protein 6e-45 90
Z1598 NP_287102.1 hypothetical protein Not tested TAI Protein 3e-49 83
Z1159 NP_286694.1 hypothetical protein Not tested TAI Protein 3e-49 83
unnamed CAD66191.1 hypothetical protein Not tested PAI III 536 Protein 2e-46 76
ECUMN_3365 YP_002414038.1 putative transposase Not tested Not named Protein 5e-32 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcHS_A2121 YP_001458799.1 IS66 family orf1 VFG1672 Protein 3e-45 90
EcHS_A2121 YP_001458799.1 IS66 family orf1 VFG1666 Protein 7e-47 76
EcHS_A2121 YP_001458799.1 IS66 family orf1 VFG1738 Protein 1e-32 55