Gene Information

Name : EcHS_A1260 (EcHS_A1260)
Accession : YP_001457982.1
Strain : Escherichia coli HS
Genome accession: NC_009800
Putative virulence/resistance : Unknown
Product : ISEhe3, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1263333 - 1264145 bp
Length : 813 bp
Strand : -
Note : identified by similarity to GB:AAP17067.1; match to protein family HMM PF00665

DNA sequence :
GTGCTGGATGTTCATCCCAGTGGTTTTTACGCCTGGCTTCAGCAGCCGCATTCACAACGCCATCAGGCAGACCTGAGACT
GACAGGACAGATTAAACAGTTCTGGCTGGAATCGGGATGCGTCTATGGTTATCGCAAAATCCATCTGGATTTGCGTGACA
GCGGGCAACAGTGCGGAGTAAACAGAGTCTGGAGACTGATGAAACGTGTCGGAATAAAGGCTCAGGTCGGATACCGAAGC
CCGCGGGCACGTAAAGGCGAGGCCAGTATCGTGTCACCCAACAGGCTCCAGCGACAGTTCAATCCGGATGCTCCTGATGA
GCGTTGGGTAACGGACATAACCTACATCAGGACCCACGAAGGCTGGCTGTATCTTGCCGTTGTTGTTGATCTGTTCTCAC
GCAAAATTATCGGCTGGTCCATGCAATCCCGGATGACAAAGGACATTGTCCTGAACGCACTGCTGATGGCTGTATGGCGG
CGTAATCCCGAAAAACAGGTGCTGGTTCATTCGGATCAGGGCAGTCAGTACACAAGCCATGAGTGGCAGTCGTTCCTGAA
ATCACACGGCCTGGAGGGTAGCATGAGCCGTCGCGGTAACTGCCATGATAATGCGGTTGCAGAAAGTTTTTTCCAGTTGT
TGAAACGTGAACGGATAAAGAAAAAGATCTACGGAACGCGGGAAGAAGCCCGCAGTGATATTTTTGATTACATCGAAATG
TTTTATAACAGTAAGCGTCGGCATGGTTCTAGCGAACAGATGTCACCGACAGAATATGAAAACCAGTATTATCAACGGCT
CGGAAGTGTCTAG

Protein sequence :
MLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRS
PRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWR
RNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEM
FYNSKRRHGSSEQMSPTEYENQYYQRLGSV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 5e-41 46
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 4e-43 45
tnpB CAB61574.1 transposase B Not tested HPI Protein 5e-44 45
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 9e-41 45
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-40 45
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 1e-28 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 1e-28 42
unnamed CAI43898.1 putative transposase Not tested LEE Protein 1e-29 42
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 1e-29 42
Z5089 NP_290241.1 transposase Not tested LEE Protein 1e-28 42
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 1e-28 42
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 3e-29 42
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 3e-29 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcHS_A1260 YP_001457982.1 ISEhe3, transposase orfB VFG0785 Protein 6e-29 42
EcHS_A1260 YP_001457982.1 ISEhe3, transposase orfB VFG1484 Protein 2e-29 42