Gene Information

Name : EcHS_A1049 (EcHS_A1049)
Accession : YP_001457779.1
Strain : Escherichia coli HS
Genome accession: NC_009800
Putative virulence/resistance : Virulence
Product : outer membrane usher protein fimD-like protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 1060831 - 1063431 bp
Length : 2601 bp
Strand : +
Note : identified by similarity to SP:P30130; match to protein family HMM PF00577

DNA sequence :
ATGTATAGAACTCACCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGT
GTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGAACCTGCCTTTTTCAAAGATGATCCCTCAATGGTGGCCGATT
TGTCTCGTTTCGAAAAAGGACAAAAAATAACGCCAGGGGTTTATCGTGTCGATATTGTTCTGAATCAGACAATTGTAGAT
ACGCGCAACGTCAATTTTGTTGAGTTAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATGCAAT
GGGTGTGAATACTGATGCGTTTCCGGCTTTTAAACAACTGGACAAACAAGCGTGTGCGCTATTGGCGGAGATTATTCCGG
ATGCCAGCGTAACTTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATTGCTATAAAAAGTAACGCTCGT
GGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCATTTAGCGGGGCTAACAGTAT
TCATAGCAGCGCAGACAGTGATTCTGGCGACAGTTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGAT
TGCGCAACAATTCAACATGGAGTCGCAGTAGTGGCCAAACCGCAGAATGGAAGAATCTCATCAGCTATTTGCAGCGGGCG
GTTATTCCACTAAAAGGCGAACTGACCGTAGGTGATGATTATACTGCAGGCGATTTTTTCGATAGTGTCAGCTTTCGTGG
TGTGCAGCTGGCGTCAGATGACAACATGCTGCCAGACAGCCTGAAAGGGTTTGCGCCTGTGGTGCGTGGTATCGCCAAAA
GCAATGCCCAGATAACGATTAAGCAAAATGGTTACACCATTTACCAAACTTATGTATCGCCTGGTGCTTTTGAAATTAGT
GATCTCTATTCCACGTCGTCGAGCGGTGATTTGTTAGTTGAAATCAAAGAAGCGGACGGCAGCGTCAATAGCTACAGCGT
ACCGTTTTCCAGCGTGCCATTACTCCAGCGTCAGGGGCGAATCAAATACGCGGTGACACTGGCGAAATACAGAACCAATA
GTAATGAACAGCAGGAGAGCAAATTTGCCCAGGCCACGTTGCAGTGGGGCGGACCGTGGGGAACGACATGGTATGGTGGT
GGACAATATGCTGAATATTACCGTGCCGCCATGTTTGGTCTGGGATTTAACCTTGGCGATTTCGGAGCAATTTCGTTCGA
TGCGACCCAGGCGAAGAGTACGCTGGCAGACCAAAGCGAACATAAAGGTCAGTCATATCGTTTTCTGTATGCCAAAACGC
TCAACCAATTGGGCACTAATTTTCAATTGATGGGCTATCGCTATTCGACGTCGGGTTTCTACACCCTTTCCGACACCATG
TATAAACATATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCGATGTGGTCGCGTTATTACAATTTGTT
TTACACCAAACGTGGCAAACTGCAGGTCAATATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGTGGTAGCC
AGCAAACTTACTGGCATACCGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTCTCGCTG
GGGGGTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGATGCTGATCAGGTGTTTGCACTAAATTTTTCCCTGCCGCT
CAATCTGTTGCTCCCCAGAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAACACCAGTATCG
ATAACGAAGGGCACATTACACAAAACCTGGGTTTAACGGAGACACTACTCGATGACGGTAACCTGAGCTACAGCGTGCAA
CAGGGATATAACAGCGAGGGGAAAACGGCTAATGGTAGCGCCAGCATGGACTACAAAGGGGCGTTTGCAGATGCCCGAGT
GGGCTACAACTACAGCGATAACGGCAGTCAACAACAACTGAACTACGCTCTTTCAGGCAGTTTAGTTGCCCATTCACAGG
GCATTACCCTGGGGCAATCGCTGGGGGAAACTAACGTTCTGATTGCAGCACCAGGCGCAGAGAATACTCGTGTGGCGAAC
AGCACCGGGCTGAAAACTGACTGGCGCGGATATACCGTTGTTCCTTATGCCACTTCTTATCGGGAAAATCGAATCGCACT
TGATGCGGCGTCGTTAAAACGTAACGTGGATCTTGAAAATGCAGTAGTCAACGTGGTTCCCACCAAAGGGGCGTTGGTTC
TGGCGGAGTTCAATGCCCATGCGGGTGCAAGGGTATTAATGAAAACATCAAAGCAGGGTATACCGCTGCGTTTTGGCGCG
ATAGCGACGCTGGACGGCGTACAGGCTAATAGCGGCATAATTGATGATGATGGCTCGCTCTATATGGCGGGTTTACCGGC
GAAGGGAACAATAAGCGTGCGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAATTACGAGCTTACCGAACAACAAA
TTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAA

Protein sequence :
MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFEPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVELTPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACALLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLISYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGPWGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GGSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRFGA
IATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYELTEQQINSAITRMDAICR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 48
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 5e-180 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcHS_A1049 YP_001457779.1 outer membrane usher protein fimD-like protein VFG0876 Protein 0.0 49
EcHS_A1049 YP_001457779.1 outer membrane usher protein fimD-like protein VFG0446 Protein 2e-178 49
EcHS_A1049 YP_001457779.1 outer membrane usher protein fimD-like protein VFG1645 Protein 3e-180 46
EcHS_A1049 YP_001457779.1 outer membrane usher protein fimD-like protein VFG0912 Protein 4e-180 46
EcHS_A1049 YP_001457779.1 outer membrane usher protein fimD-like protein VFG0454 Protein 6e-168 45