Gene Information

Name : CKO_00940 (CKO_00940)
Accession : YP_001452526.1
Strain : Citrobacter koseri ATCC BAA-895
Genome accession: NC_009792
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 937103 - 938017 bp
Length : 915 bp
Strand : -
Note : COG: COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Psort location: extracellular, including cell wall, score: 9

DNA sequence : 
ATGCTTCAACTAAAGACGGTAAAGATAATCCTGTTAAGCACCTTTATCACAGGACTGACAGCTATTCATGGCGCTTATGC
TGCTGAAAAGTTTAAGGTCATCACGACATTCACGGTAATTGCTGACATGGCACAGAACGTGGCAGGGGACGCCGCCGAAG
TCAGTTCGATTACCCGGCCTGGCGCAGAAATCCATGAATATCAGCCTACAACCGGAGATATAAAGCGTGCTCAGGGGGCA
CAGCTAATCCTTTCAAATGGCTTCAACCTCGAACTCTGGTTTCAAAAATTTTATCAACGATTGAAAAACGTACCGGATGT
GGTGGTCACTACAGGTATCACTCCAATAAGCATTACCGAGGGTCCGTATGATGGAAAACCAAATCCTCATGCCTGGATGT
CGCCTGATAATGCACTGATTTATGTAGATAATATTCGTGATGCGCTGGTGAAATACGATCAGGGAAATGCTGAAACTTAC
AAAGCCAATGCGGACGCCTATAAACAAAAGATCCGTCAGACGCTTGAACCGCTGCGTAAACAAATAGAAACCCTCCCTGC
CGAACAGCGCTGGCTGGTATCGAGCGAAGGCGCATTTTCTTATCTGGCACGCGATCTGGGACTGAAAGAACTCTATCTAT
GGCCGATTAATGCCGATCAACAGGGAACCCCGCAACAGGTTCGTAACGTAATCGATAAAGTCCGGCAGAATAAAATTCCG
GCGGTATTTAGCGAAAGTACCGTTTCCAATAAACCAGCCCGTCAGGTCGCACGCGAAACAGGTGCACATTATGGGGGCGT
ACTTTATGTGGATTCCCTGAGCGCAGCAAATGGCCCGGTTCCCACCTACCTTGATCTGCTGAACGTCACTACCCGGACAG
TGGTACAGGGTTTGCACAGCGGAATGAAGGAGTAA

Protein sequence : 
MLQLKTVKIILLSTFITGLTAIHGAYAAEKFKVITTFTVIADMAQNVAGDAAEVSSITRPGAEIHEYQPTTGDIKRAQGA
QLILSNGFNLELWFQKFYQRLKNVPDVVVTTGITPISITEGPYDGKPNPHAWMSPDNALIYVDNIRDALVKYDQGNAETY
KANADAYKQKIRQTLEPLRKQIETLPAEQRWLVSSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRNVIDKVRQNKIP
AVFSESTVSNKPARQVARETGAHYGGVLYVDSLSAANGPVPTYLDLLNVTTRTVVQGLHSGMKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-110 74
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-110 74
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-110 74
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-111 74
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 9e-111 74

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_00940 YP_001452526.1 hypothetical protein BAC0349 Protein 5e-111 74
CKO_00940 YP_001452526.1 hypothetical protein BAC0439 Protein 3e-91 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_00940 YP_001452526.1 hypothetical protein VFG0525 Protein 5e-111 74