Gene Information

Name : CKO_00939 (CKO_00939)
Accession : YP_001452525.1
Strain : Citrobacter koseri ATCC BAA-895
Genome accession: NC_009792
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 936278 - 937099 bp
Length : 822 bp
Strand : -
Note : KEGG: rru:Rru_A2894 8.9e-76 ABC transporter component K02074; COG: COG1121 ABC-type Mn/Zn transport systems, ATPase component; Psort location: cytoplasmic, score: 23

DNA sequence : 
ATGAGCCAGGCGGCAGGCATCACAGTAGCGGGCTTAACTGTTGTTTATCGTAACGGCCATAAGGCATTACAGAATGCATC
ATTCAGCGTCCCTAAAGGTTCGAACGCGGCCCTGCTGGGGGTAAATGGTTCCGGAAAATCCACACTATTCAGGGCAATGA
TGGGATTCGTATCCCCTTCATGCGGAACGATTTCACTTCTCGGGATGCCTCCTGCACAGGCGCTTCGCCGCAATATTATT
GCCTATGTACCTCAGTCCGAGGAAATTGACTGGTCGTTCCCGGTATTGGTGGAAGATGTCGTCATGATGGGCCGGTATGG
CCATATGGGTATGCTGCGTAGAGCGGGTAAAGAAGATCGCAGGATCGTTAATGATGCGCTTGAGCGTGTAGATATGCTTC
CTTACCGCCACCGGCAGATTGGTGAATTATCCGGAGGGCAAAAGAAGCGGGTGTTCCTCGCGCGTTCTATTGCACAACGG
GGCAAAGTAATCCTTCTTGATGAGCCTTTTACCGGTGTGGATGTCAATACCGAAAAGAAAATCATCACGCTGCTTGGCGA
ACTGAAAGAAGAAGGCAGCACCCTGGTGGTTTCAACGCATAACCTTACCTCCGTATCCGAATATTGTGATTATACCGTTC
TGGTGAAAGGCACCGTGCTGGCAAGCGGTCCTGTCGCCACGACATTTACGCCGGAAAATATAAAAAAGACGTTTAGTGCA
AACATTGAGAGTGAGTCAGATATATTGCCAGTTCAGGGAGGATCAACACAGCCAAATTATCAACCTTCCGCTGAATATGA
AGATAAAGGCAGGTCATCATGA

Protein sequence : 
MSQAAGITVAGLTVVYRNGHKALQNASFSVPKGSNAALLGVNGSGKSTLFRAMMGFVSPSCGTISLLGMPPAQALRRNII
AYVPQSEEIDWSFPVLVEDVVMMGRYGHMGMLRRAGKEDRRIVNDALERVDMLPYRHRQIGELSGGQKKRVFLARSIAQR
GKVILLDEPFTGVDVNTEKKIITLLGELKEEGSTLVVSTHNLTSVSEYCDYTVLVKGTVLASGPVATTFTPENIKKTFSA
NIESESDILPVQGGSTQPNYQPSAEYEDKGRSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-80 70
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-80 70
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-80 70
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-81 70
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-80 70

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_00939 YP_001452525.1 hypothetical protein BAC0350 Protein 7e-81 70
CKO_00939 YP_001452525.1 hypothetical protein BAC0440 Protein 2e-70 59
CKO_00939 YP_001452525.1 hypothetical protein BAC0400 Protein 6e-46 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_00939 YP_001452525.1 hypothetical protein VFG0526 Protein 6e-81 70