Gene Information

Name : CKO_00938 (CKO_00938)
Accession : YP_001452524.1
Strain : Citrobacter koseri ATCC BAA-895
Genome accession: NC_009792
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 935421 - 936281 bp
Length : 861 bp
Strand : -
Note : COG: COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; Psort location: plasma membrane, score: 23

DNA sequence : 
ATGAGCTGGCTTCTGGAGCCTTTTGGTTATCAATACATGCTCAATGCCATGTGGATTTCGGCAATGGTCGGAGGAATATG
TGCTTTTTTATCCTGTTATCTGATGTTGAAGGGTTGGTCACTAATTGGCGATGCGCTGTCCCATTCTATCGTACCCGGAG
TAGCTGGCGCTTTTATGCTGGGACTGCCCTTCTCGGTGGGTGCGTTTGTTTCTGGCGGGCTGGCAGCAGGCAGCATGTTC
CTTCTTAATCAACGTACCCGTCTAAAAGAAGATGTCATCATTGGTTTGATCTTTTCATCCTTTTTCGCGCTTGGATTATT
TATCATCTCGCTGAATCCTGTTTCGGTAAATATACAATCAATCATTCTGGGAAATATCCTGGCGGTTCCGCCAGAAGATA
TTCTTCAGCTTACCGTCATTGGCATTATTTCGGTTATTACGTTGTTATTAAAATGGAGAGATTTATTACTGACCTTTTTC
GATGAAAATCATGCGCGGGCGGTAGGATTACATCCGGAAAGGCTTAAGATATTATTTTTCCTTCTGTTAACCCTCTCCAC
CGTTGCGGCATTACAGACCGTAGGCGCGTTCATGGTGATCTGCCTTGTGGTAACGCCTGGCGCAACGGCCTGGCTGCTTA
CTGATCGCTTCCCCCGCCTGGTCTGTATTGCGGTGACCATAGGCAGTGTCACCAGCTTTCTGGGTGCGTGGGCAAGTTAC
TACCTTGATGGCGTAACGGGTGGCATTATCGTGGTCGCTCAGACCCTCATTTTCTTGCTGGTGTTCATTTTCGCCCCGGT
ACATGGCTTACTGGCGAACCGCCGATCGGTTTCTCAGTCAAAAGGACCGCGTAAATGCTGA

Protein sequence : 
MSWLLEPFGYQYMLNAMWISAMVGGICAFLSCYLMLKGWSLIGDALSHSIVPGVAGAFMLGLPFSVGAFVSGGLAAGSMF
LLNQRTRLKEDVIIGLIFSSFFALGLFIISLNPVSVNIQSIILGNILAVPPEDILQLTVIGIISVITLLLKWRDLLLTFF
DENHARAVGLHPERLKILFFLLLTLSTVAALQTVGAFMVICLVVTPGATAWLLTDRFPRLVCIAVTIGSVTSFLGAWASY
YLDGVTGGIIVVAQTLIFLLVFIFAPVHGLLANRRSVSQSKGPRKC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-92 78
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-92 78
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-92 78
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-92 78
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-92 78

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_00938 YP_001452524.1 hypothetical protein BAC0351 Protein 6e-93 78
CKO_00938 YP_001452524.1 hypothetical protein BAC0441 Protein 2e-66 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_00938 YP_001452524.1 hypothetical protein VFG0527 Protein 6e-93 78