Gene Information

Name : CKO_04414 (CKO_04414)
Accession : YP_001455906.1
Strain : Citrobacter koseri ATCC BAA-895
Genome accession: NC_009792
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator QseB
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4087040 - 4087699 bp
Length : 660 bp
Strand : +
Note : response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes

DNA sequence : 
ATGCGTATTTTACTGGTAGAAGATGACGCGCTGATTGGCGACGGCATCAAGGCGGGTTTAAGCAAAATGGGGTTCAGCGT
CGACTGGTTCACCGAAGGTCGTCAGGGTAAAGAAGCGCTCTACAGCGCGCCTTATGATGCGGTGATCCTCGACCTTACGC
TACCGGGGATGGACGGGCGGGATATCCTGCGCGAATGGCGTGAACAGGGAAAACGCGAACCCGTACTGATTCTGACGGCG
CGCGATGCGCTGGCGGAACGCGTGGAGGGGCTGCGTCTGGGGGCGGACGACTATCTGTGCAAACCTTTCGCGCTGATTGA
AGTCGCCGCCCGCCTGGAGGCGCTGTTACGCCGCGCTAACGGCCAGGTGAGCAACGAACTGCGCCACGGCCAGGTTACGC
TCAATCCCGGTAATCTGGTCGCGACGCTGGCAGGCGATCCGCTGCCCCTGAAGCCGAAAGAGTTTGCCCTGCTGGAGCTG
CTGATGCGCAACGTCGGGCGCGTGTTGCCGCGTAAGCTCATCGAAGAGAAGCTGTATACCTGGGACGAAGATGTCTCCAG
CAATACCATTGAGGTACATGTTCATCATTTACGCCGTAAGCTGGGCAGTGATTTTATCCGCACCGTACACGGGATCGGCT
ACACCCTGGGCAACCCATGA

Protein sequence : 
MRILLVEDDALIGDGIKAGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREQGKREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALLRRANGQVSNELRHGQVTLNPGNLVATLAGDPLPLKPKEFALLEL
LMRNVGRVLPRKLIEEKLYTWDEDVSSNTIEVHVHHLRRKLGSDFIRTVHGIGYTLGNP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-33 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB BAC0487 Protein 3e-33 45
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB NC_002516.2.879194.p Protein 5e-24 43
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB BAC0083 Protein 3e-30 43
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB BAC0308 Protein 2e-29 43
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB BAC0347 Protein 4e-28 42
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB BAC0638 Protein 2e-25 42
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB BAC0197 Protein 1e-28 42
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB BAC0111 Protein 9e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB VFG0473 Protein 4e-33 47
CKO_04414 YP_001455906.1 DNA-binding transcriptional regulator QseB VFG1390 Protein 1e-24 42