Gene Information

Name : CKO_04093 (CKO_04093)
Accession : YP_001455596.1
Strain : Citrobacter koseri ATCC BAA-895
Genome accession: NC_009792
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3805926 - 3806774 bp
Length : 849 bp
Strand : +
Note : COG: COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components; Psort location: endoplasmic reticulum, score: 9

DNA sequence : 
ATGCGCTTAACCGCCTTACTGGAACCCTTCCAGTTTGATTTTATGATCAACGCGCTCATGGTCTCGGCAATTGTGGCGAT
CCCCTGCGCGTTATTGTCGGTGTTTCTGGTGCTGAAAGGCTGGGCGTTAATGGGCGACGCCATGAGTCACGCCGTGTTCC
CCGGCATTGTGCTGGCCTATATCGCCGGTATTCCGCTGGCCATCGGCGCGTTTATTGCCGGGCTATTCTGCGCGGTTGCC
ACCGGCTATCTCGACGATAACAGCCGCATTAAGCGCGATACCATCATGGGAATCGTCTTCTCAGGAATGTTTGGCGCAGG
GCTGGTGCTGTACGTTTCTATCCAGTCTGAAGTCCATCTGGATCATATTCTGTTCGGCGATATGCTGGGCGTGTCCATCA
GCGATATTCTGCAAACGGCGCTGATTGCGCTGGGTATTGCGCTGATTATCGGGCTGAAATGGAAAGACTTTTTACTGCAT
GCCTTCGATCCGCACCAGGCAAAAGCCAGCGGCCTTAATACCTCCCTGCTGCATTATGGCCTGTTGTGCATGATCGCGTT
GACCATCGTCGCAACGCTGAAATCGGTGGGGATTATTCTTTCCATCTCGCTGTTAATCGCCCCTGGCGCGATTGCGATTT
TGCTGACGCGGCGTTTTGCCCGCGCGCTGATGTTGGCGGTCACGCTGTCGGTCGTCACCTCTTTTCTCGGCGTTTATCTG
TCGTTTTTCCTCGACAGCGCCCCTGCGCCAACCATCGTAGTATTGTTCACTGCGATCTTCATCGTGGCATTTATTTACGC
TACGTTGCGGGAGCGGCGTTCCGAAATGCAGCTCAAACAGCAGTTATAA

Protein sequence : 
MRLTALLEPFQFDFMINALMVSAIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLAYIAGIPLAIGAFIAGLFCAVA
TGYLDDNSRIKRDTIMGIVFSGMFGAGLVLYVSIQSEVHLDHILFGDMLGVSISDILQTALIALGIALIIGLKWKDFLLH
AFDPHQAKASGLNTSLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFARALMLAVTLSVVTSFLGVYL
SFFLDSAPAPTIVVLFTAIFIVAFIYATLRERRSEMQLKQQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-99 89
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-99 89
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-100 89
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-99 88
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-99 88
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 9e-40 42
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-39 42
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-39 42
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-39 42
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-39 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_04093 YP_001455596.1 hypothetical protein BAC0352 Protein 4e-100 89
CKO_04093 YP_001455596.1 hypothetical protein BAC0442 Protein 8e-61 54
CKO_04093 YP_001455596.1 hypothetical protein BAC0351 Protein 6e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_04093 YP_001455596.1 hypothetical protein VFG0528 Protein 4e-100 89
CKO_04093 YP_001455596.1 hypothetical protein VFG0527 Protein 5e-40 42