Gene Information

Name : CKO_03532 (CKO_03532)
Accession : YP_001455048.1
Strain : Citrobacter koseri ATCC BAA-895
Genome accession: NC_009792
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3290335 - 3291582 bp
Length : 1248 bp
Strand : -
Note : COG: COG0582 Integrase; Psort location: cytoplasmic, score: 23

DNA sequence :
ATGGCTCTCACCGATATCAAAGTTAGGACTACCAAGCCCTCCGACAAACCTTTCAAACTCACAGATGGGCAGGGTATGCA
CCTGCTGATCAACCCCAATGGTTCAAAATACTGGCGACTTCAATACCGTTTCGATGGCAAACAGAAAGTTTTAGCATTGG
GTGTTTATCCAATGGTCTCTCTTGGTGAAGCTCGCAGGAAACGAGATGAGGCCAAAAAGTTGGTATCTGTTGGTATTGAT
CCTTCTGAGAAGAAAAAAGCCGACAAGATCGAGCAAAGTGAAGCCCTGACATTCGAGGCTGTCGCAAGGGACTGGCATAC
TGCCTGTAAAAGGAAATGGTCTGATTCCCACAGCGAGAGAGTTCTAAAAAGCATGGAAGATGGTCTCTTTACTACTATTG
GTAAAAGAAAAATATCCGAGCTTAATACCAGAGATCTTCTTGCCCCTATCAAGGCTGTTGAAGCTTCCGGCCGACTGGAA
GTTGCTTCCCGACTACAGCAAAGGACGACGGCAGTAATGCGATATGCTGTCCAGAACGGGCTGATAGATTACAACCCTGC
TCAGGAGATGGCAGGAGCTATTGCTGTAGCCAAAAGAATCCACAGGCCAGCTTTGCCATTCGAACGATTTTCAGAACTCT
TAGAACGAATTGATAACTTCAAAGGTAGGAAACTCACGAAGTTAGCCGTAAAGCTGACATTGCTCATTTTTATCCGTTCC
AGTGAACTCCGATTCGCAAGATGGTCGGAGATCGACTTTGAAAATGCGATGTGGACTATCCCTGGAGAACGCGAGCCATT
GCCAGGAGTCAAACATTCCCATCGAGGTTCAAAAATGAAGACCCCACACCTCGTGCCGTTAAGTCGTCAGGCTTTAGAAC
TTCTAAAAGCCATCAGAGAAATCAGCGGCGAATTCGACCTTGTATTCATTGGCGATCATGATTTCAGAAAACCTATGAGC
GAAAACACAGTGAACAAGGCGCTCAGGTCGATGGGTTATGACACAACCGTTGAGGTATGTGGGCATGGTTTTAGAGCGAT
GGCTTGTAGTGCTTTGATCGAGTCAGGAAAGTGGTCGAGAGATGCTGTTGAGAGGCAGATGAGCCATCAGGAGCGGAACT
CCGTTCGTGCCGCATACATTCATAAAGCTGAGCATTTGGACGAGCGTAGGTTGATGTTGCAGTGGTGGGCTGATTATCTT
GATGAAACAACTAAGAGAAGAATTGCACCTTTTGATTTTCATAACTAA

Protein sequence :
MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFDGKQKVLALGVYPMVSLGEARRKRDEAKKLVSVGID
PSEKKKADKIEQSEALTFEAVARDWHTACKRKWSDSHSERVLKSMEDGLFTTIGKRKISELNTRDLLAPIKAVEASGRLE
VASRLQQRTTAVMRYAVQNGLIDYNPAQEMAGAIAVAKRIHRPALPFERFSELLERIDNFKGRKLTKLAVKLTLLIFIRS
SELRFARWSEIDFENAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAIREISGEFDLVFIGDHDFRKPMS
ENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGKWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYL
DETTKRRIAPFDFHN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-140 73
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 1e-134 68
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-137 68
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 7e-137 68
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-136 68
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-136 68
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 9e-137 68
int AAK00456.1 Int Not tested SHI-1 Protein 6e-127 68
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 8e-137 68
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-136 68
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-136 68
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-136 68
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 2e-136 68
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-136 68
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 2e-136 68
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-136 68
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 8e-137 68
int AAK16198.1 Int Not tested PAI-I AL862 Protein 8e-137 68
int CAC81896.1 integrase Not tested LEE II Protein 8e-127 68
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 4e-135 67
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 8e-136 67
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 6e-134 67
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-125 61
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-125 61
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 7e-113 58
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 2e-74 54
int CAA08754.1 integrase Not tested HPI Protein 2e-105 54
int CAB59974.1 integrase Not tested HPI Protein 3e-106 54
int YP_002346908.1 integrase Not tested HPI Protein 7e-105 53
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 7e-105 53
int2 NP_993013.1 integrase Not tested HPI Protein 7e-105 53
int CAA21384.1 - Not tested HPI Protein 7e-105 53
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 9e-87 53
unnamed AAD17660.1 unknown Not tested HPI Protein 4e-102 52
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 8e-108 52
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 8e-108 52
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-98 50
int AAD44730.1 Int Not tested SHI-2 Protein 6e-82 46
int CAC39282.1 integrase Not tested LPA Protein 1e-82 45
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-82 45
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-80 44
int ACU09430.1 integrase Not tested LEE Protein 2e-80 44
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-80 44
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-80 44
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 2e-80 44
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 3e-80 44
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 3e-80 44
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-71 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_03532 YP_001455048.1 hypothetical protein VFG1536 Protein 2e-140 73
CKO_03532 YP_001455048.1 hypothetical protein VFG0626 Protein 7e-137 68
CKO_03532 YP_001455048.1 hypothetical protein VFG1693 Protein 2e-135 67
CKO_03532 YP_001455048.1 hypothetical protein VFG0783 Protein 1e-80 44
CKO_03532 YP_001455048.1 hypothetical protein VFG0598 Protein 1e-80 44