Gene Information

Name : CKO_02625 (CKO_02625)
Accession : YP_001454169.1
Strain : Citrobacter koseri ATCC BAA-895
Genome accession: NC_009792
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : N : Cell motility
COG ID : COG3188
EC number : -
Position : 2429339 - 2431951 bp
Length : 2613 bp
Strand : -
Note : COG: COG3188 P pilus assembly protein, porin PapC; Psort location: extracellular, including cell wall, score: 9

DNA sequence :
ATGAAGAAGATAACGTATCTTCCCGGTTCACTGCCGGGGTATACGCCACATCTGACGGGGGGGGCGTTGTCCATATTGGC
GGCGCTCTATCCGGCGATAAGTCATGGCGAAAGTTACTTTAACCCGGCTTTTTTGTCGGCAGATGCTGCGTCCGTGGCAG
ATTTGTCACGTTTTGAGAAAGGCAATCACCAGCCCCCGGGCATCTATCGGGTGGATATCTGGCGCAACGATGAGTTCGTC
GCGACCCAGGATATTCGCTTTGAAACCTCGTCGACGAAAACCGGTGAAAAATCAGGCGGATTAATGCCCTGTTTTGATCT
GGCGTGGATCAAAAGGCTGGGGGTAAATACCACCGCCTTTCCTGCGCTTGGGCAAAGCCAGGAGGAGACCTGCATCAATT
TGCCAGAGGCGATTCCCGGCGCTGAAATCGCTTTTGATTTTTCCTCAATGCGTTTAAATATCAGTCTTCCGCAGGCGTCA
ATGCTGAACAGCGCGCGCGGGTATATCCCGCCGGAAGAGTGGGATGAGGGGATTCCCGCCGCGCTTATCAACTACAGTTT
TACCGGCAGTCGCGGGACGAACAGCGACAGCTATTTTTTAAGCCTGATGAGCGGCCTGAACTATGGCTCGTGGCGGTTGC
GTAACAACGGCGCGTGGAGCTATTCCAAAGGCGACGGATACCACTCGCAAAGCTGGAAAAACATCGGCACCTGGGTACAA
CGCGCCATTATCCCGTTGAAAAGCGAACTGGTGATGGGGGACAGCAACACCGGCAACGACGTGTTTGACAGCGTGGGCTT
TCGCGGGGCGCGACTCTACTCTTCCGACAATATGTACCCTGATAGCCTGCAAGGCTATGCGCCGACCGTGCGTGGGATCG
CCCGTACCGCCGCAAAACTGACTATCCGCCAGAACGGCTATGTGATCTATCAGAGCTATGTCTCACCGGGCGCTTTCGCG
ATCACCGACCTCAACCCAACGTCTTCAAGCGGCGACCTGGACGTGACGGTTGATGAGAAAGACGGCAGTCAGCAGCGCTA
TACGGTGCCGTACTCCACCGTTCCGCTGTTGCAGCGCGAAGGACGTATGAAGTTCGACCTGGTGGCGGGGGATTTTCGCA
GCGGCAATAGCCAGCAATCCTCGCCATTCTTCTTCCAGGGAACGCTGATCGCCGGTCTGCCTGAAGGGTATACCGCTTAT
GGCGGCACGCAGCTGGCTTCGCGCTACAGCTCGGTGGTGCTGGGGGCCGGACGGAACCTGGGCGACTGGGGCGCGGTTTC
GGTAGACGTCACCCACGCCCGCAGCCAACTGGCGGATGACAGCACCCACCAGGGGCAGTCGCTGCGTTTCCTGTACGCCA
AGTCGTTGAACAACTACGGCACTAACTTCCAGTTACTGGGCTATCGCTATTCCACGCGCGGATTCTACACGCTTGACGAT
GTGGCGTACCGCAGTATGGAAGGGTACGAGTATGAATATGACAGCGAAGGTAAGCGTCATAAAGTGCCGGTAGTGCAGAG
CTATCACAACCTGAACTACAGCAAAAAAGGCCGATTCCAGGTCAACATTTCACAGAATCTGGGGGATTACGGCTCGCTGT
ATATCTCCGGCAGTCAGCAAACATACTGGAACACGTCGGATGCCAATACCTGGTATCAACTGGGATATGCCAGCGGCTGG
CAAGGGATCAGCTACTCCCTTTCCTGGTCGTGGAATGAATCCGTAGGGATTTCCGGCACCGATCGCATTCTGGCATTCAA
CATGTCGGTTCCGTTCAGCGTGCTCACCGGGCGACGCTACTCGCGCGACAATGCCCTGGATCGCACCTACGCCACCTTTA
ACGCGAACCGGAACAGCAATGGACAGAACAGCTGGCAGACCGGCATCGGCGGGACATTGTTAGACGGGCGTAACCTGAGC
TACAGCGTGAACCAGGGACACAGCAGCACCAATGGCTACAGCGGCAGCGCCAGCGCGAACTGGCAGGCGGCTTACGGGAC
GCTCGGCGTGGGGTACAACTACGATCGAGACCAGCATGACTACAACTGGCAGCTGTCTGGCGGCGTGGTCGGTCATGCGG
ACGGCATCACGCTCAGTCAGCCTTTAGGCGATACCAATGTCCTGATTAAAGCGCCAGGCGCCGAAGGGGTGCATATAGAA
AACCAGACCGGGGTGCAAACTGACTGGCGCGGATATGCGGTCATGCCTTATGCCACCGTATATCGCTATAACCGTGTCGC
GCTGGATACCAACTCAATGGATAACCACACCGATGTGGAGAATAACGTCAGCAGCGTGGTGCCGACGCAAGGGGCGCTGG
TACGCGCTGCCTTTGACACGCGAATCGGCGTGCGCGCAATTGTCACCGCAAAACAGGGCGATCGCCCGGTGCCGTTTGGC
TCAATTGTGCGCGAAACCGCCAGCGGCGTCACCAGTATGGCGGGCGATGACGGGCAAATTTATCTGAGCGGACTGCCGCT
GAAAGGGGAACTGCTGATTCAGTGGGGAGAGGGAGCGAACGCCCGCTGCGTGGCGCATTATTCCCTGCCTGAAGAGAGCC
TGAAGCAGGCGGTGACGCTGCTTAATGCGACCTGTAAACGTCCGTCGTCATGA

Protein sequence :
MKKITYLPGSLPGYTPHLTGGALSILAALYPAISHGESYFNPAFLSADAASVADLSRFEKGNHQPPGIYRVDIWRNDEFV
ATQDIRFETSSTKTGEKSGGLMPCFDLAWIKRLGVNTTAFPALGQSQEETCINLPEAIPGAEIAFDFSSMRLNISLPQAS
MLNSARGYIPPEEWDEGIPAALINYSFTGSRGTNSDSYFLSLMSGLNYGSWRLRNNGAWSYSKGDGYHSQSWKNIGTWVQ
RAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFA
ITDLNPTSSSGDLDVTVDEKDGSQQRYTVPYSTVPLLQREGRMKFDLVAGDFRSGNSQQSSPFFFQGTLIAGLPEGYTAY
GGTQLASRYSSVVLGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDD
VAYRSMEGYEYEYDSEGKRHKVPVVQSYHNLNYSKKGRFQVNISQNLGDYGSLYISGSQQTYWNTSDANTWYQLGYASGW
QGISYSLSWSWNESVGISGTDRILAFNMSVPFSVLTGRRYSRDNALDRTYATFNANRNSNGQNSWQTGIGGTLLDGRNLS
YSVNQGHSSTNGYSGSASANWQAAYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITLSQPLGDTNVLIKAPGAEGVHIE
NQTGVQTDWRGYAVMPYATVYRYNRVALDTNSMDNHTDVENNVSSVVPTQGALVRAAFDTRIGVRAIVTAKQGDRPVPFG
SIVRETASGVTSMAGDDGQIYLSGLPLKGELLIQWGEGANARCVAHYSLPEESLKQAVTLLNATCKRPSS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 49
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 1e-178 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_02625 YP_001454169.1 hypothetical protein VFG0446 Protein 0.0 88
CKO_02625 YP_001454169.1 hypothetical protein VFG0876 Protein 0.0 48
CKO_02625 YP_001454169.1 hypothetical protein VFG0912 Protein 4e-179 48
CKO_02625 YP_001454169.1 hypothetical protein VFG1645 Protein 6e-179 47
CKO_02625 YP_001454169.1 hypothetical protein VFG0454 Protein 1e-156 42