Gene Information

Name : CKO_02216 (CKO_02216)
Accession : YP_001453775.1
Strain : Citrobacter koseri ATCC BAA-895
Genome accession: NC_009792
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0741
EC number : -
Position : 2058059 - 2058502 bp
Length : 444 bp
Strand : -
Note : KEGG: cpe:CPE1992 2.8e-08 probable soluble lytic transglycosylase K01238; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); Psort location: extracellular, including cell wall, score: 9

DNA sequence :
ATGAAACGTTTAATTTTGTTGTTATTGATGTTAAGTCAAAGCGCGTTTGCCAACTGCTGGGACAGAGCCGCAAATTATTA
TCATGTTGACCCTTATTTATTATTTGCCATTGCGCAAGTTGAGTCTGGCATGAATCCCTATGCGGTAGGACGAAATCACG
ACGGAACGAGGGATGTCGGGTTGATGCAAATAAATAGCTCGCATTTTTCAGCGCTGGAACGCCGTGGCATTGATGAGTAT
CGACTGATGCTGGAACCCTGTACATCTATTATGGTCGGCGCGTCGATCTTATCCGATATGATCAAAGTATATGGTTATAA
CTGGGAGGCGGTAGGCGCATATAACGCCGGGGTTAAAAAAGAGAATTACCCGCAGCGCATGATTTACGCGCATAAAGTCT
GGGAAACATACCAGCGTATAAAAATGACCACGCAATATAAATAA

Protein sequence :
MKRLILLLLMLSQSAFANCWDRAANYYHVDPYLLFAIAQVESGMNPYAVGRNHDGTRDVGLMQINSSHFSALERRGIDEY
RLMLEPCTSIMVGASILSDMIKVYGYNWEAVGAYNAGVKKENYPQRMIYAHKVWETYQRIKMTTQYK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iagB NP_461798.1 invasion protein precursor Virulence SPI-1 Protein 8e-31 53
iagB YP_217796.1 cell invasion protein Virulence SPI-1 Protein 7e-31 53
iagB NP_457271.1 cell invasion protein Virulence SPI-1 Protein 1e-30 52
iagB NP_806480.1 cell invasion protein Virulence SPI-1 Protein 1e-30 52
hpa2 NP_640772.1 Hpa2 protein Virulence Hrp PAI Protein 4e-11 45
XC_3001 YP_244069.1 Hpa2 protein Virulence Hrp PAI Protein 2e-11 44
hpa2 NP_636615.1 Hpa2 protein Virulence Hrp PAI Protein 2e-11 44
hpaH YP_362172.1 transglycosylase HpaH Virulence Hrp PAI Protein 3e-11 44
hpaH AAL78295.1 HpaH precursor Virulence Hrp PAI Protein 2e-11 44
etgA AFO66324.1 putative lytic transglycosylase Not tested SESS LEE Protein 2e-18 41
etgA AFO66404.1 putative lytic transglycosylase Not tested SESS LEE Protein 2e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKO_02216 YP_001453775.1 hypothetical protein VFG0539 Protein 2e-31 53
CKO_02216 YP_001453775.1 hypothetical protein VFG0994 Protein 1e-17 43