|
Name : CKO_02178 (CKO_02178) Accession : YP_001453738.1 Strain : Citrobacter koseri ATCC BAA-895 Genome accession: NC_009792 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 2018505 - 2019797 bp Length : 1293 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGT AGATAAGCTGCGCGCTCTTGAAGAGCGTCGTAAAGTTTTGCAGGTCAACACGGAAAACCTGCAAGCAGAGCGTAACTCTC GATCGAAATCCATCGGCCAGGCGAAAGCGCGCGGGGAAGATATCGAGCCTTTACGTCTGGAAGTGAACAAGCTGGGCGAA GAGCTGGATGCGGCAAAAGCCGAGCTGGAGAGCTTACAGGCTGAAATTCGCGATATCGCGCTGACCATTCCTAACTTACC GGCTGATGATGTACCGGTAGGTAAAGATGAAAACGACAACGTTGAAGTCAGCCGTTGGGGAACCCCGCGTGAGTTTGATT TCGACGTCCGCGATCATGTGACGCTGGGTGAAATGCACGCCGGTCTCGACTTCGCGGCTGCGGTTAAACTGACCGGTTCT CGTTTTGTGGTAATGAAAGGGCAGATTGCCCGTATGCACCGCGCGCTGTCGCAGTTCATGCTGGATCTGCACACTGAACA GCATGGTTACAGTGAAAACTACGTGCCGTATCTGGTGAACCACGACACGCTGTACGGTACAGGGCAGTTGCCGAAATTTG CGGGCGATCTGTTCCATACTCGCCCGCTGGAAGAAGAGGCTGACAGCAGCAACTATGCGCTGATCCCGACGGCGGAAGTG CCGCTGACTAACCTGGTGCGTGATGAAATCATCGACGAAGATGCGCTGCCGATCAAAATGACTGCGCATACGCCATGCTT CCGTTCTGAAGCGGGTTCTTACGGTCGTGACACGCGCGGTCTGATCCGTATGCACCAGTTCGATAAAGTTGAGATGGTGC AGATTGTGCGTCCAGAAGAGTCAATGGATGCGCTGGAAGAGATGACCGGTCATGCTGAGAAAGTGCTTCAGTTGCTGGGT CTGCCGTACCGTAAAATCGTTCTGTGTACCGGTGACATGGGCTTTGGCGCATGTAAAACCTACGATCTCGAAGTATGGAT CCCGGCGCAGAACACCTATCGTGAAATCTCTTCCTGCTCGAACGTATGGGATTTCCAGGCGCGTCGTATGCAGGCACGCT GCCGCAGTAAGTCCGACAAGAAAACCCGTCTGGTTCATACCCTGAACGGTTCCGGTCTGGCGGTTGGGCGTACTTTAGTT GCCGTGATGGAAAACTACCAGCAGGCTGATGGCCGCATCGAAGTTCCAGAAGTATTACGTCCGTATATGAACGGGCTGGA ATATATCGGCTAA Protein sequence : MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVNTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGE ELDAAKAELESLQAEIRDIALTIPNLPADDVPVGKDENDNVEVSRWGTPREFDFDVRDHVTLGEMHAGLDFAAAVKLTGS RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEV PLTNLVRDEIIDEDALPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEESMDALEEMTGHAEKVLQLLG LPYRKIVLCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLV AVMENYQQADGRIEVPEVLRPYMNGLEYIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 8e-109 | 57 |
