Gene Information

Name : EcE24377A_E0038 (EcE24377A_E0038)
Accession : YP_001451577.1
Strain :
Genome accession: NC_009790
Putative virulence/resistance : Unknown
Product : IS66 family transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 38653 - 40191 bp
Length : 1539 bp
Strand : -
Note : identified by match to protein family HMM PF03050

DNA sequence :
ATGAACGACATCTCTTCTGACGACATCTTCCTGCTGAAACAGCGCCTGGCCGAACAGGAAGCGCTGATCCACGCCCTGCA
GGAAAAGCTGAGCAACTGGGAGCGCGAAATAGACCATCTGCAGGCGCAGCTGGATAAACTCCGCCGGATGAACTTCGGCA
GTCGTTCCGAAAAAGTCTCCCGCCGTATCGCACAAATGGAAGCCGATCTGAACCGGCTTCAGAAAGAGAGCGATACGCTG
ACTGGTAGGGTGTATGACCCGGCTGTACAGCGTCCGTTGCGTCAGACCCGCACCCGTAAGCCGTTCCCTGAATCACTACC
CCGTGACGAAAAGCGACTGTTGCCTGCGGCGCCGTGCTGCCCGAACTGCGGCGGTTCACTGAGCTATCTGGGCGAGGATA
CCGCCGAACAGCTGGAGTTGATGCGTAGTGCCTTCCGGGTTATCCGGACGGTACGGGAAAAACATGCCTGTACTCAGTGC
GATGCCATCGTGCAGGCACCTGCACCTTCGCGGCCCATCGAGCGGGGTATCGCCGGACCGGGGCTGCTGGCCCGCGTGCT
GACCTCGAAGTATGCAGAGCACACCCCGCTGTATCGCCAGTCAGAAATATACGGCCGGCAAGGTGTGGAGCTGAGCCGTT
CACTGCTGTCGGGCTGGGTGGATGCATGCTGCCGGCTGCTGTCTCCGCTGGAAGAGGCGCTTCATGGCTATGTCATGACT
GACGGCAAACTCCATGCCGATGATACCCCGGTCCAGGTACTGCTGCCGGGTAATAAGAAGACGAAGACCGGGCGGTTGTG
GGCGTATGTTCGTGATGACCGCAATGCCGGGTCAGCGTTGGCACCTGCAGTGTGGTTCGCTTACAGCCCGGACAGAAAAG
GCATCCATCCGCAGACTCATCTTGCCTGCTTCAGCGGTGTGCTGCAAGCGGATGCGTACGCCGGGTTCAACGAGCTGTAT
CGCAATGGTGGGATAACGGAAGCTGCCTGCTGGGCTCATGCCCGCCGAAAGATCCACGATGTGCACGTCCGCATCCCGTC
AGCACTGACGGAAGAAGCCCTGGAGCAGATCGGTCAGTTGTACGCCATAGAGGCGGATATAAGGGGAATGCCGGCAGAGC
AGCGGCTTGCTGAACGTCAGCGAAAAACGAAACCGCTGTTGAAATCCCTGGAAAGCTGGTTGCGTGAAAAGATGAAAACC
CTGTCGCGACACTCAGAACTGGCGAAAGCGTTCGCATACGCCCTGAACCAGTGGCCGGCGCTGACGTACTATGCAGATGA
TGGCTGGGCTGAGGCGGACAATAACATCGCTGAAAATGCGTTGCGGATGGTCAGTCTGGGCCGCAAAAACTACCTGTTCT
TCGGTTCGGATCATGGAGGAGAGCGGGGAGCGCTGCTGTACAGCCTGATCGGGACGTGCAAACTGAACGGAGTGGAGCCA
GAAAGCTACCTCCGCTATGTCCTTGACGTCATAGCCGACTGGCCGATAAACCGGGTCGGCGAACTGCTCCCCTGGCGCGT
AGCACTGCCGACTGAATAA

Protein sequence :
MNDISSDDIFLLKQRLAEQEALIHALQEKLSNWEREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDTL
TGRVYDPAVQRPLRQTRTRKPFPESLPRDEKRLLPAAPCCPNCGGSLSYLGEDTAEQLELMRSAFRVIRTVREKHACTQC
DAIVQAPAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALHGYVMT
DGKLHADDTPVQVLLPGNKKTKTGRLWAYVRDDRNAGSALAPAVWFAYSPDRKGIHPQTHLACFSGVLQADAYAGFNELY
RNGGITEAACWAHARRKIHDVHVRIPSALTEEALEQIGQLYAIEADIRGMPAEQRLAERQRKTKPLLKSLESWLREKMKT
LSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEP
ESYLRYVLDVIADWPINRVGELLPWRVALPTE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08460.1 unknown Not tested SRL Protein 0.0 99
unnamed AAC31494.1 L0015 Not tested LEE Protein 0.0 98
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 0.0 98
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 0.0 98
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 0.0 97
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 0.0 97
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 0.0 97
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 0.0 97
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 0.0 97
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 0.0 97
tnp AEA34686.1 transposase Not tested Not named Protein 0.0 97
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-168 96
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 0.0 96
unnamed AAL57570.1 unknown Not tested LEE Protein 0.0 96
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 4e-152 65
Z1161 NP_286696.1 hypothetical protein Not tested TAI Protein 2e-155 64
Z1600 NP_287104.1 hypothetical protein Not tested TAI Protein 2e-155 64
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 7e-105 62
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 2e-140 60
tnp AEA34687.1 IS66 family transposase Not tested Not named Protein 2e-101 59
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-130 56
Z4317 NP_289543.1 hypothetical protein Not tested OI-122 Protein 4e-117 54
ECO103_3554 YP_003223421.1 hypothetical protein Not tested LEE Protein 4e-117 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcE24377A_E0038 YP_001451577.1 IS66 family transposase VFG1051 Protein 0.0 99
EcE24377A_E0038 YP_001451577.1 IS66 family transposase VFG0793 Protein 0.0 98
EcE24377A_E0038 YP_001451577.1 IS66 family transposase VFG1700 Protein 1e-168 96
EcE24377A_E0038 YP_001451577.1 IS66 family transposase VFG1736 Protein 1e-124 63
EcE24377A_E0038 YP_001451577.1 IS66 family transposase VFG1513 Protein 4e-105 62