Gene Information

Name : EcE24377A_E0035 (EcE24377A_E0035)
Accession : YP_001451574.1
Strain :
Genome accession: NC_009790
Putative virulence/resistance : Unknown
Product : IS21 family transposition helper protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 34347 - 35141 bp
Length : 795 bp
Strand : -
Note : identified by match to protein family HMM PF00308; match to protein family HMM PF01695

DNA sequence :
ATGCATGAACTGGAGACACTGCTGAGTCGTCTTAAAATGGAACATCTGGGCTACCACGTTGAAAGCCTGCTGGAGCAGGC
GGCCAAAAAAGAACTGAACTACCGCGAGTTCCTGTGCATGGCGTTGCAGCAGGAATGGAACGGGAGGCATCAGCGCGGTA
TGGAGTCCCGGCTGAAACAGGCCCGCTTCCCGTGGGTCAAAACGCTGGAGCAGTTCGACTTCGGCTTCCAGCCAGGTATC
GATCGTAAGGTCGTCCGTGAGCTGGCCGGGCTGGCGTTCGTGGAGCGTAGCGAGAACGTGATCCTGCTGGGTCCGCCCGG
TGTGGGTAAAACGCACCTGGCAGTCGCTCTCGGGGTAAAAGCGGCGGACGCTGGTCATCGGGTACTGTTCATGCCACTGG
ATAAGCTGATCGCCACACTCATGAAGGCAAAACAGGAAAACCGGCTGGAAAAACAGCTACAGCAGCTTGGTTATGCCCGG
GTACTGATACTGGATGAGATAGGCTATCTGCCGATGACCCGCGAGGAAGCCAGTCTGTTCTTCCGGTTGCTGAACCGTCG
ATATGAAAAAGCGAGCATCGTGCTGACATCAAATAAAGGGTTCGCCGACTGGGGAGAGATGTTCGGCGATAACGTGCTGG
CAACGGCAATCCTGGATCGACTGCTCCACCACTCAACCACACTGAACATCAAAGGAGAAAGCTACCGGTTAAAGGAAAAA
CGCAAAGCGGGAGTGCTGGCAAAAAACGCCACGCCAATCAGTGATGATGAAATGGCGGAAAGCGGACAACATTAA

Protein sequence :
MHELETLLSRLKMEHLGYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARFPWVKTLEQFDFGFQPGI
DRKVVRELAGLAFVERSENVILLGPPGVGKTHLAVALGVKAADAGHRVLFMPLDKLIATLMKAKQENRLEKQLQQLGYAR
VLILDEIGYLPMTREEASLFFRLLNRRYEKASIVLTSNKGFADWGEMFGDNVLATAILDRLLHHSTTLNIKGESYRLKEK
RKAGVLAKNATPISDDEMAESGQH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 8e-51 47
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 2e-41 47
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 6e-51 46
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 6e-51 46
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 6e-51 46
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 6e-51 46
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 9e-51 46
api84 CAF28558.1 putative transposase Not tested YAPI Protein 6e-51 46
unnamed CAA21402.1 - Not tested HPI Protein 9e-51 46
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 6e-51 46
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 9e-51 46
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 9e-51 46
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 1e-50 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcE24377A_E0035 YP_001451574.1 IS21 family transposition helper protein VFG1663 Protein 4e-51 47
EcE24377A_E0035 YP_001451574.1 IS21 family transposition helper protein VFG1460 Protein 9e-42 47
EcE24377A_E0035 YP_001451574.1 IS21 family transposition helper protein VFG1606 Protein 4e-51 46
EcE24377A_E0035 YP_001451574.1 IS21 family transposition helper protein VFG1515 Protein 4e-51 46
EcE24377A_E0035 YP_001451574.1 IS21 family transposition helper protein VFG1627 Protein 4e-51 46