Gene Information

Name : EcE24377A_F0058 (EcE24377A_F0058)
Accession : YP_001451423.1
Strain :
Genome accession: NC_009786
Putative virulence/resistance : Unknown
Product : IS21 family transposition helper protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 47406 - 48203 bp
Length : 798 bp
Strand : +
Note : identified by match to protein family HMM PF00308; match to protein family HMM PF01695

DNA sequence :
ATGCATGAGCTGGAAGTCCTGCTGAATCGCCTGAAAATGGAGCATCTGAGTTATCACGTTGAAAGCCTGCTGGAACAGGC
AGCTAAAAAAGAGCTGAACTACCGGGAGTTCCTGTGCATGGCGCTACAGCAGGAATGGAACGGCAGGCATCAGCGCGGTA
TGGAGTCCCGGCTGAAGCAGGCTCGTCTGCCGTGGGTCAAAACGCTGGAGCAGTTCGACTTTACCTTCCAGCCGGGCATC
GATCGTAAGGTCGTCCGGGAACTGGCAGGTCTGGCGTTCGTGGAGCGCAGCGAAAACGTGATCCTGCTGGGACCTCCGGG
TGTAGGAAAAACGCATCTGGCCATAGCTCTTGGCGTGAAAGCGGTGGATGCGGGACATCGGGTACTGTTTATGCCACTGG
ACAGACTGATCGCGACACTGATGAAAGCGAAACAGGAAAACCGGCTGGAGCGTCAGCTACAGCAACTGAGTTATGCCCGG
GTGTTGATCCTGGATGAAATAGGCTATCTGCCGATGAACAGAGAGGAAGCCAGCCTGTTTTTCCGGCTACTGAACCGTCG
ATATGAAAAAGCGAGCATCATACTGACGTCAAACAAAGGGTTCGCAGACTGGGGAGAAATGTTCGGAGATCACGTGCTGG
CAACAGCGATACTGAATCGGCTGCTACATCACTCAACCACGCTGAATATCAAAGGAGAGAGTTACCGGTTAAAAGAGAAA
CGTAAAGCTGGAGTGCTGGCCAAAAACACAACGCCAATCAGTGATGATGAAATGGTGAAAAGCGGACAGCATCAGTAA

Protein sequence :
MHELEVLLNRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGI
DRKVVRELAGLAFVERSENVILLGPPGVGKTHLAIALGVKAVDAGHRVLFMPLDRLIATLMKAKQENRLERQLQQLSYAR
VLILDEIGYLPMNREEASLFFRLLNRRYEKASIILTSNKGFADWGEMFGDHVLATAILNRLLHHSTTLNIKGESYRLKEK
RKAGVLAKNTTPISDDEMVKSGQHQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 7e-48 47
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 5e-38 47
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 2e-47 46
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 2e-47 46
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 2e-47 46
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 2e-47 46
api84 CAF28558.1 putative transposase Not tested YAPI Protein 2e-47 46
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-47 46
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 2e-47 46
unnamed CAA21402.1 - Not tested HPI Protein 2e-47 46
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 2e-47 46
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 2e-47 46
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 1e-46 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcE24377A_F0058 YP_001451423.1 IS21 family transposition helper protein VFG1460 Protein 3e-38 47
EcE24377A_F0058 YP_001451423.1 IS21 family transposition helper protein VFG1515 Protein 9e-48 46
EcE24377A_F0058 YP_001451423.1 IS21 family transposition helper protein VFG1627 Protein 9e-48 46
EcE24377A_F0058 YP_001451423.1 IS21 family transposition helper protein VFG1606 Protein 9e-48 46
EcE24377A_F0058 YP_001451423.1 IS21 family transposition helper protein VFG1663 Protein 6e-47 45