Gene Information

Name : EcE24377A_F0016 (EcE24377A_F0016)
Accession : YP_001451386.1
Strain :
Genome accession: NC_009786
Putative virulence/resistance : Unknown
Product : IS629, transposase orfB, truncation
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 13358 - 13804 bp
Length : 447 bp
Strand : -
Note : This gene is disrupted by the insertion of a group II intron.; identified by match to protein family HMM PF00665

DNA sequence :
GTGGCGTTCATCATTGATGTGTTTGCCGGATACATCGTGGGGTGGCGGGTCTCATCGTCCATGGAAACGACATTCGTGCT
GGATGCACTGGAGCAGGCGTTATGGGCCCGTCGACCGTCCGGCACGGTCCATCACAGTGATAAAGGTTCTCAGTATGTAT
CGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCG
ATGGCGGAGAGCATCAATGGTCTTTACAAAGCGGAGGTAATACACCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACT
GGCCACACTCACGTGGGTGGACTGGTATAACAATCGACGATTGCTGGAAAGGCTGGGCCATACTCCTCCGGCAGAAGCAG
AAAAAGCTTATTATGCTTCCATCGGAAACGATGATCTGGCAGCCTGA

Protein sequence :
MAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNA
MAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 3e-62 99
unnamed AAT48693.1 unknown Not tested PAI I 4787 Protein 1e-50 94
r15 AAC61720.1 putative transposase R15 Not tested PAI I CFT073 Protein 1e-50 94
c3594 NP_755469.1 transposase Not tested PAI I CFT073 Protein 5e-59 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
EcE24377A_F0016 YP_001451386.1 IS629, transposase orfB, truncation VFG1715 Protein 2e-59 94