|
Name : lysS (SGO_0753) Accession : YP_001450052.1 Strain : Streptococcus gordonii Challis Genome accession: NC_009785 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 791823 - 793313 bp Length : 1491 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTACTGAACATTTTGAAGAATTAAATGACCAGCAAATTATTCGCCGTGAAAAAATGGCTGCGCTGGCTGAGCAAGG AATTGATCCTTTCGGAAAACGTTTTGAGCGCACTGCAAACTCTGGACAATTAAAAGAAAAATACGCAGATAAAAGTAAAG AAGAGTTGCACGACTTAGCTGATACAGCTACTATTGCTGGACGTCTCATGACTAAACGTGGTAAAGGAAAAGTTGGATTT GCTCACATCCAAGACCGCGAGGGCCAAATTCAAATTTACGTCCGCAAAGATGAAGTCGGTGAAGAAAACTATGAAATCTT TAAAAAAGCTGACTTAGGCGACTTCCTTGGAGTTGAAGGTGAAGTGATGCGTACTGATATGGGAGAATTATCTATCAAAG CTACCCATATTACCCACCTTTCTAAAGCACTTCGTCCCCTTCCTGAAAAATTCCATGGACTGACAGATGTGGAGACTATT TATCGCAAACGCTATTTGGATTTGATTTCTAACCGTGAGAGCTTCAATCGATTTGTTACTCGCTCAAAAATCATTTCTGA AATTCGCCGTTACTTAGACGGGCAAGGCTTCCTTGAAGTCGAAACTCCTGTTCTCCACAATGAAGCAGGTGGTGCTGCTG CCCGTCCTTTCATTACTCATCACAATGCCCAAAATATCGATATGGTGCTTCGAATTGCAACTGAATTGCACCTTAAGCGC CTCATTGTAGGTGGTATGGAACGGGTCTATGAAATCGGACGTATCTTCCGTAACGAAGGAATGGACGCTACTCATAATCC AGAGTTTACGTCTATTGAAGTTTACCAAGCTTATGCAGACTTCCAAGATATTATGGACTTGACAGAAGGAATTATTCAAC ATGCAGCTATCTCTGTATGTGGAGATGGACCTATAAACTATCAGGGAACTGAAATCAAGATCAATGAACCATTTAAACGC GTTCATATGGTAGATGCCATCAAGGAAATTACTGGCGTAGATTTCTGGCAAGATATGAGCTTTGAAGAAGCCACTGCCTT GGCCAAAGAAAAGAATGTTCCTCTCGAAAAGCACTTCACAGAAGTCGGCCATGTTATTAATGCTTTCTTTGAAGAATTTG TTGAAGAAACCTTAACTCAACCAACCTTTATCTATGGTCATCCTGTTGCAGTATCTCCTCTGGCTAAGAAAAATCCAGAA GATCCACGTTTCACTGACCGTTTCGAGCTCTTCATCATGACCAAGGAATATGCCAACGCCTTCACCGAATTGAACGATCC AATCGATCAACTCTCTCGTTTTGAAGCCCAAGCTAAAGCTAAAGAACTAGGTGATGACGAAGCTACCGGCATTGACTACG ACTATGTAGAAGCTCTAGAATATGGTATGCCACCAACTGGAGGTCTAGGTATTGGGATTGACCGTCTAGTTATGTTGCTG ACTGACGTGACTACCATTCGTGATGTCCTTCTCTTCCCGACAATGAAATAA Protein sequence : MTTEHFEELNDQQIIRREKMAALAEQGIDPFGKRFERTANSGQLKEKYADKSKEELHDLADTATIAGRLMTKRGKGKVGF AHIQDREGQIQIYVRKDEVGEENYEIFKKADLGDFLGVEGEVMRTDMGELSIKATHITHLSKALRPLPEKFHGLTDVETI YRKRYLDLISNRESFNRFVTRSKIISEIRRYLDGQGFLEVETPVLHNEAGGAAARPFITHHNAQNIDMVLRIATELHLKR LIVGGMERVYEIGRIFRNEGMDATHNPEFTSIEVYQAYADFQDIMDLTEGIIQHAAISVCGDGPINYQGTEIKINEPFKR VHMVDAIKEITGVDFWQDMSFEEATALAKEKNVPLEKHFTEVGHVINAFFEEFVEETLTQPTFIYGHPVAVSPLAKKNPE DPRFTDRFELFIMTKEYANAFTELNDPIDQLSRFEAQAKAKELGDDEATGIDYDYVEALEYGMPPTGGLGIGIDRLVMLL TDVTTIRDVLLFPTMK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 9e-108 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001450052.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 5e-108 | 47 |
