|
Name : clpB (SGO_1998) Accession : YP_001451248.1 Strain : Streptococcus gordonii Challis Genome accession: NC_009785 Putative virulence/resistance : Virulence Product : ATP-dependent Clp proteinase, ATP-binding chain Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 2049395 - 2051824 bp Length : 2430 bp Strand : - Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 DNA sequence : ATGAAATATTCAAAAGCCTTGATTGTTAGTATAGAAGAAGCCCAGCAACTGGCTAGTCATTTTGAATCTGAGTATTTAGA GTCATGGCATCTCTTGATTGCTTTTTCTAATTATCCGTACAGCGTAGCAGGCTCAGTTTTAAACGATTATCCGCTAGAAA TTGATCATTTTGAGGATGCTGCTTACCATGTGGTAGGGAAATCTTATCAGAAGGAAGGGCGATTTAGTATCCTGCCTTTT TCTCATCGCTTGACGACTCTTTTTAAGGAGGCAAAAGCTATAGCCGAAGCTACTCACGCAAAGGAAGTCGGAACTGAACA CATCTTATACGCTATCATCAGCGATAGAGGTACCCTAGCAACTCGTATTTTGGAATTTGTCGGCTTTAGTTATGAAGACA AAGAAGGAGTCTTGCGTATTAATGATTTGCGAAGAAATCTGGAACAAAAGTCTGGCTGGACTAAGAATGATTTAAAAGCA ATCCGCAGTCTTCATAAAGGTTTTAATCAAGCCAAGCAAAACATGGCAAACATGATGGGGATGCCACCTACTCAGAGTGG TGGTCTAGAAGATTACACACGAGACTTGACGGAATTAGCTCGTTCAGGTCAGCTAGAGCCTGTTGTTGGTCGAGATCAGG AAATCTCTCGGATGATTCAGGTTCTCAGTCGCAAGACGAAGAATAACCCTGTCTTGGTTGGGGATGCTGGAGTTGGTAAA ACTGCTCTAGCTCTCGGTTTGGCCCAGCGTGTAGCTTCTGGTCAAGTTCCACACGAACTAGCCAAAATGCGGGTTTTAGA GCTTGATTTAATGAATGTAGTCGCAGGGACTCGTTTCCGTGGGGATTTTGAAGAGCGTATGAACAATATCATCGATGATA TTGAGAAAGATGGTAAGGTCATTCTCTTTATCGATGAGCTTCATACGATTATGGGATCTGGTAGCGGTATTGACTCTACG ATGGATGCTGCGAATATCCTTAAACCTGCTCTGGCTCGCGGAACACTGCGTACGATAGGAGCTACAACTCAAGAAGAATA CCAAAAGCATATTGAAAAAGACGCTGCTCTATCTCGGCGCTTTGCTAAGATCAGTATTGAAGAACCAAGTGTGGCTGACA GCATTGCTATCCTTAAGGGCCTAAAAGAAAACTATGAAGCCCATCATAAGGTAACGATTACAGATCAAGCCATTGAAACA GCAGTAAAATATGCCCACCGTTATTTGACAAGTAAGCATCTGCCTGATTCAGCAATTGATCTGTTAGATGAAGCGAGTGC CACAGTACGTAACAATGGTCCTCAGAGTCATGCACAAGAGGATTTGAGTCCAGCAGATCGAGCAATTATAGCTGGTCAGT TCAATAAACTTAGTCGCTTGATCGAGAAAGAAAATCAACCTCTGTTAAGTGATTTAAGAGTAGAGGAAGCAGATATTCTG ACAACCCTAAGTCGGCTGTCTGGTATTCCAGTTCAAAAATTGACCCAGACAGATGCTAAGAAGTATTTGCACTTAGAAGA AGAATTGCATAAGCGGGTGATTGGTCAAGATGAAGCTATCTCAGCTATTAGTCGTGCAATCCGTCGTAACCAGTCAGGTA TTCGAGCGAATAAGCGACCGATTGGTTCCTTTATGTTCTTGGGACCAACTGGAGTTGGTAAGACCGAGTTGGCTAAGGCT TTGGCAGAAACCCTCTTTGACGACGAATCAGCTCTCATTCGTTTTGATATGAGTGAATACATGGAGAAATTTGCTGCTAG CCGTCTCAATGGAGCGCCTCCAGGCTACGTCGGCTATGAAGAAGGAGGCGAATTAACAGAGAAAGTTCGCAACCGACCAT ATTCCGTCCTCTTATTTGATGAAGTGGAAAAAGCTCATCCAGATATTTTCAATGTCCTTCTGCAGGTTTTAGATGATGGT GTATTAACTGATAGTAAGGGACGAAAGATTGATTTTTCAAATACGATTATTATCATGACCAGTAACCTAGGTGCAACCAG TCTGCGTGATGATAAGACAGTTGGCTTTGGGGCTCGCGACATCCGTTTAGACCATGCAAATATGGAAAAACGAATGTTAG AAGAGCTCAAAAAGACATACCGTCCAGAATTTATTAACCGGATTGATGAAAAAGTCGTCTTCCATAGCTTGTCTGCTGAC CATATGCAGGAGGTTGTAAAAGTGATGATTAAGCCTCTGGTTGCCAGTCTAGCTGAAAAGAATATCCAACTAAAATTCCA AGCTAGTGCCTTGAAACTACTAGCTAAAGAAGGCTATGATGTAGAAATGGGGGCTAGACCTCTTCGTAGGACTCTGCAAA CCAAAGTTGAAGACAAACTAGCAGAACTGCTATTGACAGGTGATTTACAAGCAGGCCAGACCTTGAAGGTGGGAGTTAAG GCAGGTCAGTTGAAGTTTGATATAGCCTAA Protein sequence : MKYSKALIVSIEEAQQLASHFESEYLESWHLLIAFSNYPYSVAGSVLNDYPLEIDHFEDAAYHVVGKSYQKEGRFSILPF SHRLTTLFKEAKAIAEATHAKEVGTEHILYAIISDRGTLATRILEFVGFSYEDKEGVLRINDLRRNLEQKSGWTKNDLKA IRSLHKGFNQAKQNMANMMGMPPTQSGGLEDYTRDLTELARSGQLEPVVGRDQEISRMIQVLSRKTKNNPVLVGDAGVGK TALALGLAQRVASGQVPHELAKMRVLELDLMNVVAGTRFRGDFEERMNNIIDDIEKDGKVILFIDELHTIMGSGSGIDST MDAANILKPALARGTLRTIGATTQEEYQKHIEKDAALSRRFAKISIEEPSVADSIAILKGLKENYEAHHKVTITDQAIET AVKYAHRYLTSKHLPDSAIDLLDEASATVRNNGPQSHAQEDLSPADRAIIAGQFNKLSRLIEKENQPLLSDLRVEEADIL TTLSRLSGIPVQKLTQTDAKKYLHLEEELHKRVIGQDEAISAISRAIRRNQSGIRANKRPIGSFMFLGPTGVGKTELAKA LAETLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDG VLTDSKGRKIDFSNTIIIMTSNLGATSLRDDKTVGFGARDIRLDHANMEKRMLEELKKTYRPEFINRIDEKVVFHSLSAD HMQEVVKVMIKPLVASLAEKNIQLKFQASALKLLAKEGYDVEMGARPLRRTLQTKVEDKLAELLLTGDLQAGQTLKVGVK AGQLKFDIA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-146 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_001451248.1 | ATP-dependent Clp proteinase, ATP-binding chain | VFG0079 | Protein | 7e-163 | 52 |
| clpB | YP_001451248.1 | ATP-dependent Clp proteinase, ATP-binding chain | VFG0080 | Protein | 4e-122 | 45 |
