|
Name : lysS (VIBHAR_00960) Accession : YP_001444186.1 Strain : Genome accession: NC_009783 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 966427 - 967959 bp Length : 1533 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGACTGATGCTGTTCAAAACGAAACTGTACAAGAAGCCTCTGCACAAGAAGAGAACAAGCTAATTGCTGAACGCCGCGC TAAACTGGATGCAATCCGAAAGAGCTGCAAAGCGAACGGCCATCCAAACGACTTCCGTCGTGACGCACTAGCGGGCGACC TTCAGAAAGAGTTCGGTGAAAAGACGAAGGAAGAGCTAGAAGAGCTTAACCACGTAGTAGCAATCGCTGGCCGTATCATG GCTAAACGTGGCCCATTCTTGGTAATTCAAGAAACTTCTGGCCGTATCCAAGCTTACGCTGATAAGGCGGTACAAAAAGT ACTGAAAGAAAAATACCAAGGTCTAGATATCGGTGACATCATCGGTGTTAAAGGTGCGTTGCACAAATCTGGTAAAGGCG ACCTATACGTGAACATGGAAGAGTTCGAATTGCTAACCAAAGCACTTCGTCCACTACCAGAGAAGTTCCACGGCCTAACT GACCAAGAGATGCGTTACCGTCAACGTTACGTTGACCTAATCGTTAACGAAGATTCTCGTCAAGCGTTCGTAGTACGTTC TAAAGTAATGTCTGCAATCCGTAACTTCATGATCACTAAACAGTTCATGGAAGTTGAAACGCCAATGATGCACGTTATCC CTGGCGGTGCGAGTGCGCGTCCATTCATCACGCACCACAACGCACTAGACATGCCAATGTACCTACGTATCGCACCAGAG CTATACCTGAAGCGTCTAGTTGTTGGTGGTTTCGATCGCGTATTCGAAATCAACCGTAACTTCCGTAACGAAGGTCTTTC TCCACGTCATAACCCAGAATTCACTATGATGGAATTCTACATGGCGTACGCGGATTACAAAGAACTGATGGACCTAACTG AAGAGCTACTAAGCTCTGTTGCTCTAGAAGTTCTAGGTTCAACGTCAATGCCTTACGGTGATGACACGGTTGAGTTTGGC GGCACTTACACTCGTATGAGCATGTTCGAAGCAATCAAGCACTACAACCCAGACCACGCGCAAATCCAAGCGCTAACAGA AGAAGACATTCAAAACCGTGACCTAATGGTTTCTATCGCGAAATCTGTTCACGTTGAAGTAGAATCTTTCTGGACATGTG GTCAGCTTCTTGAAGAGATCTTTGGTGAAACAGCTGAACCTAAGCTAATGCAGCCAACGTTCATCACTGGTTACCCAGCA GATATCTCTCCATTGGCTCGTCGTAGCGATGACAACCCGTTCTTCACTGACCGCTTTGAATTCTTCATCGGTGGTCGTGA AGTAGCGAACGGCTTCTCTGAGCTTAACGACGCTGAAGACCAAGACGCACGCTTTAAAGCACAGGTTGAAGCGAAAGAAT CTGGTGATGACGAAGCAATGTTCTACGATGCTGACTACATCACTGCACTAGAGCACGGCCTACCGCCAACAGCAGGCCAA GGTATCGGTATCGACCGCCTAGTTATGCTGCTGACTAACACGCACACTATCCGTGACGTGATCCTATTCCCAGCGATGCG CCCACAAGCGTAA Protein sequence : MTDAVQNETVQEASAQEENKLIAERRAKLDAIRKSCKANGHPNDFRRDALAGDLQKEFGEKTKEELEELNHVVAIAGRIM AKRGPFLVIQETSGRIQAYADKAVQKVLKEKYQGLDIGDIIGVKGALHKSGKGDLYVNMEEFELLTKALRPLPEKFHGLT DQEMRYRQRYVDLIVNEDSRQAFVVRSKVMSAIRNFMITKQFMEVETPMMHVIPGGASARPFITHHNALDMPMYLRIAPE LYLKRLVVGGFDRVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYKELMDLTEELLSSVALEVLGSTSMPYGDDTVEFG GTYTRMSMFEAIKHYNPDHAQIQALTEEDIQNRDLMVSIAKSVHVEVESFWTCGQLLEEIFGETAEPKLMQPTFITGYPA DISPLARRSDDNPFFTDRFEFFIGGREVANGFSELNDAEDQDARFKAQVEAKESGDDEAMFYDADYITALEHGLPPTAGQ GIGIDRLVMLLTNTHTIRDVILFPAMRPQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-126 | 58 |
| lysS | YP_005163386.1 | lysyl-tRNA synthetase | Not tested | Not named | Protein | 8e-77 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001444186.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-126 | 58 |
