Gene Information

Name : VIBHAR_00556 (VIBHAR_00556)
Accession : YP_001443786.1
Strain :
Genome accession: NC_009783
Putative virulence/resistance : Virulence
Product : accessory colonization factor
Function : -
COG functional category : R : General function prediction only
COG ID : COG4588
EC number : -
Position : 537401 - 538198 bp
Length : 798 bp
Strand : -
Note : COG: COG4588 Accessory colonization factor AcfC, contains ABC-type periplasmic domain; Psort location: extracellular, including cell wall, score: 9

DNA sequence : 
ATGAAATATCACATAATCGCGGCAGGATTGACCGCTCTGCTCACCAGTACTTCAACACTGGCGTCACCACTGCTCGACCC
GAGCATTATCCATAAACCAAACGATGGAGAAATCAATGTCTATGGCCCAGGAGGCCCCGACACCGCTCTCCGTCATGCCG
CAGAAGCTTTCAGTAAAAAAAGTAAGGTGACGGTAAACGTGATCGCTGGGCCTGAATCAAAGTGGACGAAAGATGCACAG
AAAAATGCTGACTTAATCTTTGGATCCGCAGAACAATCCATGAGCGCTTTTGTTGAAACCTACCCCTTTATTACCGATCA
AGATGTTGAGCCAGTGTACTTGCGCCGTGCAGTGATTGCGGTCCCAAAGGGGAACCCAAAAAATATCAACGGGATTAAAG
ACCTACTCGAAAAACCAGCGCGAATAGTCGTGACTGAAGGTTTAGGGGTTTACAACACTTCCGGTACAGGCGTTTGGGAA
GACGTCGCAGGACGCACGGGTTCACTGGCTGACGTACAGAACTTTCGCAAAAAAATCATTGCTTACGCCAAAGGCAGCGG
AGCAAGTTTCAAAGCTTTTCAACAACAAAAGGCTGATGCGTGGATCACTTGGATTCACTGGCCGCTCAACCATGCCGATA
AAGTCGACTATGTACAAATTGAGCCAGAAAGACGCATCTACCGAGATCTCACCCTAGCAAAGGCAAAAGGTGCAGATCCA
CAAACTCAAGCTTTCATTGATTTCGTTAACAGCAGTGAGGGAGAAACCTTTTTCACTCGCGAAGGTTGGACTCGTTAA

Protein sequence : 
MKYHIIAAGLTALLTSTSTLASPLLDPSIIHKPNDGEINVYGPGGPDTALRHAAEAFSKKSKVTVNVIAGPESKWTKDAQ
KNADLIFGSAEQSMSAFVETYPFITDQDVEPVYLRRAVIAVPKGNPKNINGIKDLLEKPARIVVTEGLGVYNTSGTGVWE
DVAGRTGSLADVQNFRKKIIAYAKGSGASFKAFQQQKADAWITWIHWPLNHADKVDYVQIEPERRIYRDLTLAKAKGADP
QTQAFIDFVNSSEGETFFTREGWTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
acfC AAK20768.1 accessory colonization factor AcfC Virulence VPI Protein 4e-41 43
acfC AAK20798.1 accessory colonization factor AcfC Virulence VPI Protein 4e-41 43
acfC AAA82706.1 AcfC Virulence VPI Protein 4e-41 43
VC0841 NP_230489.1 accessory colonization factor AcfC Virulence VPI-1 Protein 6e-41 43
acfC YP_001216322.1 accessory colonization factor AcfC Virulence VPI-1 Protein 6e-41 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VIBHAR_00556 YP_001443786.1 accessory colonization factor VFG0839 Protein 1e-43 44
VIBHAR_00556 YP_001443786.1 accessory colonization factor VFG0105 Protein 3e-41 43