Gene Information

Name : VIBHAR_01122 (VIBHAR_01122)
Accession : YP_001444340.1
Strain :
Genome accession: NC_009783
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1138561 - 1139793 bp
Length : 1233 bp
Strand : -
Note : COG: COG0582 Integrase; Psort location: nuclear, score: 23

DNA sequence : 
GTGGCTAAAAAAATCAGACCTTTATCTGCAACTCAAGTTAAAAACTTGAAATCACAAGCAAAGGAATTCTCTATCGGTGA
TGGTGACGGACTCTTGTTGAGGATAATGCCGAACGGTACAAAGTCATGGCTATTTAACTACATCCACCCTTCCACAAAAA
AACGGAAAAATATCGGCTTAGGCAAGTATCCCGATGTTTCTCTCGCTACTGCGAGAGAGCAAAGACAAACTATGCGAGAG
CTAGTTGCCAAAGGTATAGACCCGAAAACTCATCGAGATAATCAGCAAACTGCTGAAAAGTTAGCAGCTCAAGACACGTT
ATTACATGTAGCTAAAGAGTGGTTTGAACTAAAGCAACACTCTGTTTCTTCAGATTATGCAGATGATATTTGGCGTTCTT
TAGAATTACATATCTTTCCCAATCTAGGCCAACTACCGTTACGGGAAATTCTCGCTCCCACCGTTATCGCTCAACTACGC
CCTCTGGAGGCAAAAGGCTCTCTCGAAACAGTTAAGCGCGTGTGTCAGCGCTTGAATGAGGTTATGACATACGCGGTGAA
CTGCGGCAAAGTGGAAGCTAATCCAATAGCAAACATCAAGCAAGTCTTCAAAAAGCCAAAAGTAAAACACATGAAGACCA
TCACCCCTCAAGATTTGTCATTTCTATTGGAGAGCATGTCTAAAGTTAACATCAAGCTTGTAACACGGTGCGCATTTGAG
TTTCAACTCCATACACTCACTCGCCCTTCTGAATGCGTGAAAGCTGAGTGGAACGAAATCGATTTTGCACAAAAACTTTG
GACTATACCCAAGGACAAAATGAAGATGAAAAGGGATCATAAAATCCCTTTGTCAGACCCTGTAATTAAGCTTCTTCAAT
TCATGAAACCTATCTCTTTTGAACACAAATATGTATTTCCAAGTGATGCTAAAGCGGGTTCACACATGAATAGCCAGTCT
GTCAACGCTGCCATAAAGCGTGCTGGCTTCTCTGGAAAACTCGTTAGCCACGGAATGAGGTCGATTGGGAGTACCGCACT
GAATGAACAAGGCTTTAACAAAGACGCGATTGAGCTCTGTCTCGCACATGTTGATAAAAATACGATAAGAGATATCTACA
ACAATGCAGAGTACCTCGAGGAGCGACGCAACGTCATGCAATGGTGGAGTGAATACATCATAAGTGCTTCAAAAAACACA
TTTATTCTAGCGAAGAACCCAAATTTATTGTAA

Protein sequence : 
MAKKIRPLSATQVKNLKSQAKEFSIGDGDGLLLRIMPNGTKSWLFNYIHPSTKKRKNIGLGKYPDVSLATAREQRQTMRE
LVAKGIDPKTHRDNQQTAEKLAAQDTLLHVAKEWFELKQHSVSSDYADDIWRSLELHIFPNLGQLPLREILAPTVIAQLR
PLEAKGSLETVKRVCQRLNEVMTYAVNCGKVEANPIANIKQVFKKPKVKHMKTITPQDLSFLLESMSKVNIKLVTRCAFE
FQLHTLTRPSECVKAEWNEIDFAQKLWTIPKDKMKMKRDHKIPLSDPVIKLLQFMKPISFEHKYVFPSDAKAGSHMNSQS
VNAAIKRAGFSGKLVSHGMRSIGSTALNEQGFNKDAIELCLAHVDKNTIRDIYNNAEYLEERRNVMQWWSEYIISASKNT
FILAKNPNLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0516 NP_230167.1 phage integrase Not tested VSP-2 Protein 3e-101 52
VC0395_A0372 YP_001216328.1 phage family integrase Not tested VPI-1 Protein 2e-106 50
int AAK20773.1 integrase Not tested VPI Protein 1e-106 50
int AAK20803.1 integrase Not tested VPI Protein 1e-106 50
unnamed AAA82714.1 integrase Not tested VPI Protein 1e-106 50
VC0847 NP_230494.1 phage family integrase Not tested VPI-1 Protein 2e-106 50
VPI2_0001 ACA01818.1 phage family integrase Not tested VPI-2 Protein 4e-85 43
VC1758 NP_231394.1 phage family integrase Not tested VPI-2 Protein 2e-84 43
VC0395_A1357 YP_001217300.1 phage family integrase Not tested VPI-2 Protein 2e-84 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VIBHAR_01122 YP_001444340.1 integrase VFG1092 Protein 7e-85 43