|
Name : Rcas_0960 (Rcas_0960) Accession : YP_001431091.1 Strain : Roseiflexus castenholzii DSM 13941 Genome accession: NC_009767 Putative virulence/resistance : Virulence Product : two component transcriptional regulator Function : - COG functional category : T : Signal transduction mechanisms COG ID : COG0745 EC number : - Position : 1267196 - 1267906 bp Length : 711 bp Strand : - Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_3485 two component transcriptional regulator, winged helix family DNA sequence : ATGAGCACGATTCTGGTTGTTGATGACGAGCCAGCGCTACGCGATATGCTCCGGCTCTATCTCGAACAAGAAGGCTTCCA CGTCGTCGAAGCGGGCGACGGGAGGCGCGCGCTGTACGTGGCGCGCGTCGAAAAACCGGACCTGGTGATCCTTGACCTGA TGATGCCGGAAATGGGCGGGTATGAATTCCTGCGCGCTTTCGCAAAAGAATCGCGCACGCCGGTGATTGTGCTGACGGCA AAGATCGAGGACACCGACAAAATCCTGGGGCTGGAACTCGGCGCTGACGATTATGTCACCAAACCGTTCAATGTGCGCGA GTTGATCGCCCGCATTCGCGCAGTTCTGCGTCGCACCCAGCAGGCGCCGCTCGAACCGGACGTGCTGCGCGCGGCTGATA TTGTGCTCGACCGCACCGGGCGGACGGTGCGCGTCGGTGGACGATACATCGATCTCACACCATCGGAGTTTGCCATTCTG GCAACCCTCATGGCGGCGCCGGGGCAGGTCTTCTCGCGGCTCGACCTGCTCGACCGCGTCTCTGGCGATGCCTTTGAAGG CTCAGAGCGCACGATTGATGTGCATATCCGCAACCTGCGCGCCAAAATCGAAGACGATCCGCGCAATCCGCGCTATATTG AGACTGTATATGGCATGGGGTACCGCTTTGCGCTGCCGCGCACGCCGGACCCGTCGAAGACAGGCGCGTGA Protein sequence : MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLMMPEMGGYEFLRAFAKESRTPVIVLTA KIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQAPLEPDVLRAADIVLDRTGRTVRVGGRYIDLTPSEFAIL ATLMAAPGQVFSRLDLLDRVSGDAFEGSERTIDVHIRNLRAKIEDDPRNPRYIETVYGMGYRFALPRTPDPSKTGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| c3565 | NP_755440.1 | response regulator | Not tested | PAI I CFT073 | Protein | 6e-39 | 43 |
| unnamed | CAD42044.1 | hypothetical protein | Not tested | PAI II 536 | Protein | 5e-39 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | HE999704.1.gene2815. | Protein | 2e-39 | 46 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | AE000516.2.gene3505. | Protein | 7e-35 | 46 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP000675.2.gene1535. | Protein | 2e-41 | 45 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | AE016830.1.gene1681. | Protein | 2e-38 | 44 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_012469.1.7685629. | Protein | 3e-37 | 44 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | FJ349556.1.orf0.gene | Protein | 6e-37 | 43 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | BAC0125 | Protein | 3e-29 | 43 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_010410.6002989.p0 | Protein | 1e-38 | 42 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_011595.7057856.p0 | Protein | 1e-38 | 42 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_010400.5986590.p0 | Protein | 5e-38 | 42 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | BAC0197 | Protein | 5e-31 | 42 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP000034.1.gene3834. | Protein | 3e-29 | 42 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | AF155139.2.orf0.gene | Protein | 2e-36 | 42 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_002695.1.915041.p | Protein | 3e-29 | 42 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP004022.1.gene3215. | Protein | 5e-31 | 42 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | AE015929.1.gene1106. | Protein | 8e-25 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_002758.1121390.p0 | Protein | 9e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_010079.5776364.p0 | Protein | 9e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_002952.2859858.p0 | Protein | 9e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_007622.3794948.p0 | Protein | 9e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_003923.1003417.p0 | Protein | 9e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_013450.8614146.p0 | Protein | 9e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_002951.3238224.p0 | Protein | 9e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_007793.3914065.p0 | Protein | 9e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP000034.1.gene3671. | Protein | 1e-34 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP001485.1.gene721.p | Protein | 1e-32 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | BAC0533 | Protein | 8e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | AF130997.1.orf0.gene | Protein | 1e-29 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP000647.1.gene4257. | Protein | 8e-28 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_012469.1.7686381. | Protein | 5e-35 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP001918.1.gene3444. | Protein | 1e-35 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | BAC0596 | Protein | 5e-35 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | BAC0039 | Protein | 5e-35 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | NC_002695.1.916589.p | Protein | 3e-35 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP000647.1.gene2531. | Protein | 3e-36 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP001138.1.gene2239. | Protein | 5e-35 | 41 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | CP000034.1.gene2186. | Protein | 5e-35 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | VFG1390 | Protein | 7e-29 | 43 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | VFG1702 | Protein | 2e-39 | 43 |
| Rcas_0960 | YP_001431091.1 | two component transcriptional regulator | VFG1563 | Protein | 3e-39 | 42 |
