Gene Information

Name : Rcas_4396 (Rcas_4396)
Accession : YP_001434432.1
Strain : Roseiflexus castenholzii DSM 13941
Genome accession: NC_009767
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 5648846 - 5649802 bp
Length : 957 bp
Strand : -
Note : TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: mfa:Mfla_0410 integron integrase

DNA sequence : 
ATGTCCTCTTCCGGCCATCCGCCCAGACTGCTCGATCAGGTGCGCGGCGCGCTGCGACGCAAACACTACTCGCTCCGCAC
CGAAGAGGCGTCTATCGGATGGGTGCGCCGGTTCATCCGCTTTCATAACCTGCGCCATCCGCGCGAGATGGGATCGCGTG
AAATTGGCGCCTTCCTGACGTACCTGGCCGTCGAAGAGGAGGTTGCCGCTTCGACCCAGAACCAGGCGCTGAGCGCCTTG
CTCTTTCTGTATCGCGAGGTGTTGCAGATCGAGCTTGACGCTGATCTCTCAATAACCCCTGCCAAACGACCTCAGTACCT
GCCTGCCGCGCTTAGCCGCGCCGAGGTGCGCGCCGTGCTCGCCGCGCTGTCGGGAACTCATCAGTTGATGGCGCAACTGC
TCTACGGCAGCGGGCTGCGCTTGCTGGAGTGTTTGCGTCTGCGGGTGAAAGATCTTGATGTTGAGCAGCGCCAACTGATG
GTGCGGCAGGGTAAAGGCGGCAAGGATCGGGCGACGTTGCTGCCCGCACGATTGCATGAGCCGCTGCGCGCTCATCTCGA
ACACGTGCGTTCGATCCACGAGCAGGATCTCCGCGAGGGCTTCGGTGAGGTCTGGCTGCCCGACGCCCTGGCCCGGAAAT
TGCCTTCCGCCAGCCGTGAATGGGTCTGGCAGTATGTGTTTCCGTCGAGCCGGCGCTCTGTCGATCCGCGTTCGGGCCGC
ATGATGCGCTATCATCAAGACGAAAGCGGGTTGCAGAAGGCTGTCCGGCGGGCGGCGCAGCAGGCCAGCGTCCAGAAGCG
CGTCACCTGCCACACGTTTCGCCATCGCTTCGCGACGCATGTGCGTGAGGCTGGCGATGATATGCGCACCGTGCAGGATC
TTCCGGGTCACAAAGGATGGGCAGACCACGATGATCGACACCCACGTCCTGCGCCGTGGGCCTGGCGGGGTGCGTAG

Protein sequence : 
MSSSGHPPRLLDQVRGALRRKHYSLRTEEASIGWVRRFIRFHNLRHPREMGSREIGAFLTYLAVEEEVAASTQNQALSAL
LFLYREVLQIELDADLSITPAKRPQYLPAALSRAEVRAVLAALSGTHQLMAQLLYGSGLRLLECLRLRVKDLDVEQRQLM
VRQGKGGKDRATLLPARLHEPLRAHLEHVRSIHEQDLREGFGEVWLPDALARKLPSASREWVWQYVFPSSRRSVDPRSGR
MMRYHQDESGLQKAVRRAAQQASVQKRVTCHTFRHRFATHVREAGDDMRTVQDLPGHKGWADHDDRHPRPAPWAWRGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 1e-51 49
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 2e-51 49
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 1e-51 49
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 2e-51 49
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 1e-51 49
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 1e-51 49
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 1e-51 49
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 2e-51 49
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 1e-51 49
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 2e-51 49
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 3e-51 49
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 1e-51 49
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 1e-51 49
intI YP_001844881.1 integrase Not tested AbaR20 Protein 2e-51 49
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 1e-51 49
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 2e-51 49
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 9e-51 48
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 9e-51 48
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 9e-51 48
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 7e-51 48
intI1 AAK02045.1 integrase Not tested SGI1 Protein 9e-51 48
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 9e-51 48
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 9e-51 48
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 9e-51 48
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 9e-51 48
int1 YP_005160012.1 integrase Not tested Not named Protein 7e-38 47
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 2e-33 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rcas_4396 YP_001434432.1 integron integrase VFG1028 Protein 4e-51 48