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Name : smpB (Rcas_4350) Accession : YP_001434392.1 Strain : Roseiflexus castenholzii DSM 13941 Genome accession: NC_009767 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 5602175 - 5602651 bp Length : 477 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGCGCGGGGGAATGGCATCGAGCGCGTGGTCGCCGATAATCGTAAGGCGCGCCACGATTATTTCATCGAAGAAACCTA CGAAGCCGGAGTTGTGCTGACCGGCAGTGAGATCAAGTCTATTCGCGCCGGTCAGGTGAATCTGCGCGGCGGATATGTGC GCATCGTCAACGGCGAAGCATGGTTGTACGACGTACACATCGCACCGTATGAGCAGTCGGGGAAGTATTTTAATCACGAG CCGACCCGACCGCGCAAATTGCTGTTGCATCGGCGCGAGATTTCCCGCATTGCCGGGCAGGTCGAGCGACAGGGATATAC GCTGGTGCCGCTGCGTCTGTATTTACGCGGATCGCGCGCAAAAGTCGAGATCGGGCTGGCGCGCGGGAAGAAGTTGTACG ACAAACGCGAAGACATCGCGCGCCGTGAGGCACGCCGCACTATTGATCGCGCACTCAAGGAACGAGCGCGCCACTAA Protein sequence : MARGNGIERVVADNRKARHDYFIEETYEAGVVLTGSEIKSIRAGQVNLRGGYVRIVNGEAWLYDVHIAPYEQSGKYFNHE PTRPRKLLLHRREISRIAGQVERQGYTLVPLRLYLRGSRAKVEIGLARGKKLYDKREDIARREARRTIDRALKERARH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 5e-36 | 54 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 3e-33 | 53 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 3e-27 | 48 |
