Gene Information

Name : Rcas_3044 (Rcas_3044)
Accession : YP_001433116.1
Strain : Roseiflexus castenholzii DSM 13941
Genome accession: NC_009767
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3947010 - 3947729 bp
Length : 720 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2431 ABC transporter related

DNA sequence :
ATGTCCTGGCATATTTCTGCAAATAATGACGAACCGCTCATTATTCTCGATCGTGTATCGAAGAGCTACGAAGAAGCCGG
GCATGAGCGCGTTGTGTTGCACGATGTCAGTGCATCGTTTGCGCGCGGCGAATTCGTGGTGCTCGTCGGCAAGAGCGGTT
CGGGCAAGAGTACGTTGTTGAACCTGGTCAGCGGTATCGACACGCCGACATCCGGTGAGATTATCGTTGCCGGGCAGCCA
TTGACGCGCCTCTCGGAGCGTGATCGCACCCTGTTCCGTCGCCGTTCAGTCGGTTTCATCTTTCAGTTCTACAATCTTGT
GCCAACGCTGACGGTGCTTGAGAATCTGCTGCTGCCGCTCGAACTGAATGGCCGGACGACGGCGCGCGACCGCAATGCTG
CACTCGATCTGCTGGCGCAGGTGGGACTTGCTGACCGGCGAAATGCCTACCCCGACCGACTTTCCGGCGGTGAGCAGCAG
CGGGTGGCAGTGGCGCGCGCACTGGTGCATGAACCTGTACTCGTTCTGGCAGACGAGCCGACCGGTAACCTGGACAGCGA
TACCAGTCAGCAGGTGCTCGACCTGCTCGATACCCTCACCCGCCGTGCCGGCAAAAACCTCCTTATGGTCACGCACAGCC
CGGAAGTCGTCGGTCTAGCGGATCGCCTCTTCCGCATTGTCGAAGGGCGCCTGGTGGAAGAAGACGTGCCGGTCCGGTAA

Protein sequence :
MSWHISANNDEPLIILDRVSKSYEEAGHERVVLHDVSASFARGEFVVLVGKSGSGKSTLLNLVSGIDTPTSGEIIVAGQP
LTRLSERDRTLFRRRSVGFIFQFYNLVPTLTVLENLLLPLELNGRTTARDRNAALDLLAQVGLADRRNAYPDRLSGGEQQ
RVAVARALVHEPVLVLADEPTGNLDSDTSQQVLDLLDTLTRRAGKNLLMVTHSPEVVGLADRLFRIVEGRLVEEDVPVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-26 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-26 46
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-26 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-26 46
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 5e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rcas_3044 YP_001433116.1 ABC transporter-like protein CP001581.1.gene598.p Protein 7e-34 45
Rcas_3044 YP_001433116.1 ABC transporter-like protein NC_012469.1.7686878. Protein 7e-31 43
Rcas_3044 YP_001433116.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-22 42
Rcas_3044 YP_001433116.1 ABC transporter-like protein CP001581.1.gene798.p Protein 3e-32 41
Rcas_3044 YP_001433116.1 ABC transporter-like protein NC_012469.1.7685735. Protein 4e-32 41