Gene Information

Name : Rcas_2866 (Rcas_2866)
Accession : YP_001432950.1
Strain : Roseiflexus castenholzii DSM 13941
Genome accession: NC_009767
Putative virulence/resistance : Unknown
Product : integron integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 3716862 - 3717692 bp
Length : 831 bp
Strand : -
Note : TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: tbd:Tbd_1215 integron integrase

DNA sequence : 
TTGCTGGACCGCGTACGACAGACGCTGCGCAGAAAGCACTCCTCCTATCGCACGGAGCAGGCCTACGTCCATTGGATCAA
GCGCTTTATCTTCTTCCACAACAAGCGCCACCCCGCCGAGATGGGCGCCCCCGAGATCGAGGCGTTCCTCACCCGCCTGG
CTGTCAAGGAGAACGTGGCCGCCAGCACACAGAATCAGGCCCTTCAGTCCATCCTCTTCCTCTATCGTGAAGTGCTCCGC
CAACCCGTCGAGGAGCCCATCCACGCCCTCCGCGCCAAGAAGCCCAAACGCATCCCTACCGTGCTCACCCGCCAGGAGGT
CCAGCAGCTCTTCGCCCACCTCTCCGGCGCCCGCCTGCTGATGGTGCGCCTGCTCTACGGCAGCGGACTCCGCCTTATGG
AGTGCCTCCGACTGCGCGTCAAAGACCTCGATTTCCCCTATCAGACCATCACCGTGCGCGATGGGAAGGGAGAGAACGAT
CGCGTGACGGTCCTGCCGACTTCCCTCGTCCAGCCCCTCCAGGCCCATCTCGAGCAGGTCCGCCAGCAGCATGAGGGGGA
TCTGGCACAGGGATACGGCGCCGTCTCCCTGCCCGACGCGCTGGCCCGCACGTATCCCCACGCGGAGCGGGAGTGGGCAT
GGCAGTGGATGTTCCCCTCTCCTCGCCGCTCCGCCGACCCCCGCTCAGGCGCGATCTGCCGTCACCCCATGGACCTGGCA
ATGCTTCAGCGGGCGGTGCGTCACGCAGCCCGAGCCGCTGGCCTGACAAAGCCGGTCACCCCGCACACGCTGCGCCATTC
CCGCTACCCATCTCCCGGAGGACGGATATGA

Protein sequence : 
MLDRVRQTLRRKHSSYRTEQAYVHWIKRFIFFHNKRHPAEMGAPEIEAFLTRLAVKENVAASTQNQALQSILFLYREVLR
QPVEEPIHALRAKKPKRIPTVLTRQEVQQLFAHLSGARLLMVRLLYGSGLRLMECLRLRVKDLDFPYQTITVRDGKGEND
RVTVLPTSLVQPLQAHLEQVRQQHEGDLAQGYGAVSLPDALARTYPHAEREWAWQWMFPSPRRSADPRSGAICRHPMDLA
MLQRAVRHAARAAGLTKPVTPHTLRHSRYPSPGGRI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 8e-56 48
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 1e-55 48
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 1e-55 48
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 3e-56 48
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 8e-56 48
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 1e-55 48
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 3e-56 48
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 8e-56 48
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 1e-55 48
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 8e-56 48
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 1e-55 48
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 8e-56 48
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 1e-55 48
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 8e-56 48
intI1 AAK02045.1 integrase Not tested SGI1 Protein 1e-55 48
intI YP_001844881.1 integrase Not tested AbaR20 Protein 1e-55 48
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 8e-56 48
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 8e-56 48
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 1e-55 48
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 1e-55 48
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 7e-56 48
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 8e-56 48
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 1e-55 48
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 1e-55 48
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 3e-56 48
intI1 ADZ05789.1 integrase Not tested AbaR15 Protein 4e-38 47
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 7e-39 47
intI1 ADZ05801.1 integrase Not tested AbaR19 Protein 1e-41 46
int1 YP_005160012.1 integrase Not tested Not named Protein 5e-44 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rcas_2866 YP_001432950.1 integron integrase VFG1028 Protein 4e-56 48