Gene Information

Name : Rcas_0267 (Rcas_0267)
Accession : YP_001430418.1
Strain : Roseiflexus castenholzii DSM 13941
Genome accession: NC_009767
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 333643 - 334476 bp
Length : 834 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_0268 ABC transporter related

DNA sequence :
ATGCATCCTGAGACAGAATACATTACTCCGGTCGGAGCGATTGATTTCGTGACCGAGCCGGTGGTGCGCATTGAGCATGT
GACGAAGGAATTCATCACTGGTGGCAATCGCTTCCGCGCGCTCGACGACGTATCGCTCGACATTCATCGCGGCGAGATGG
TCGCTATTATGGGTCCGTCGGGCAGCGGCAAAAGCACGCTGATGACGATCCTGGGTCTGCTCGATGTGCCGACGTCGGGT
TCCTACTGGCTCGACGGGCAGGACGTCAGCAAACTCGATCGTGTGCAGCAGGCGCGGGTGCGCAACCAGAAACTCGGTTT
CGTCTTCCAGAACTTCAACCTGTTGCCGCGGCTGACCGCCCTGAAGAATGTGGAACTGCCGCTCGTCTACGGGCGTGTCG
GTGCGCGCGAGCGTGAGGAGCGCGCCCGTCAGGCGCTTGAAGCCGTTGGACTGGGCGCAAAAATGAACAACCGCCCGAAT
GAACTCTCTGGCGGTCAGAAGCAGCGCGTCGCCATCGCCCGTGCGCTGGTGAGCAATCCGGCAATGGTGCTCGCCGACGA
ACCGACTGGCGCGCTCGACACGCGCACCGGCGCGGAGATCATGGCGCTCTTTCGGCAGTTGAACCGCGAACAGGGCATCA
CCATCGTCATCGTCACGCACGACCCGGAGATCGGCAAGCAGATGGATCGGGTCATCGGGCTGCGCGACGGGCGGATAAGC
GAGAACATTTTGCAAGAGTATTACCACGTTGTTCCGGCAGCGGAAGAACTGGAGTTGCCGATGCGCGAAAAAGAACCGGT
CGCAGTGCCGGTTATCCGCACAGAACAGGAGTAA

Protein sequence :
MHPETEYITPVGAIDFVTEPVVRIEHVTKEFITGGNRFRALDDVSLDIHRGEMVAIMGPSGSGKSTLMTILGLLDVPTSG
SYWLDGQDVSKLDRVQQARVRNQKLGFVFQNFNLLPRLTALKNVELPLVYGRVGAREREERARQALEAVGLGAKMNNRPN
ELSGGQKQRVAIARALVSNPAMVLADEPTGALDTRTGAEIMALFRQLNREQGITIVIVTHDPEIGKQMDRVIGLRDGRIS
ENILQEYYHVVPAAEELELPMREKEPVAVPVIRTEQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 4e-27 43
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-33 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-26 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-29 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-29 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rcas_0267 YP_001430418.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-52 53
Rcas_0267 YP_001430418.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-41 51
Rcas_0267 YP_001430418.1 ABC transporter-like protein NC_012469.1.7686946. Protein 1e-27 41