Gene Information

Name : Rcas_1723 (Rcas_1723)
Accession : YP_001431833.1
Strain : Roseiflexus castenholzii DSM 13941
Genome accession: NC_009767
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2218448 - 2219239 bp
Length : 792 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_3069 ABC transporter related

DNA sequence : 
ATGACCAGCGAACAACTAGCCATTCAAGTGACCGATCTGACCGTCGCATACCGCGACAAACCGGTACTTTGGGATATTGA
TCTGACCGTGCCAGGTGGCGTGTTGATGGGGATCATCGGACCGAATGGCGCCGGGAAAACAACGTTACTCAAGACCATCC
TGGGTCTCATCCGTCCGGCTGCCGGGCAGGTGTTGATCTACGGCAAACCATATGCCGAACAGCGCCGACTGGTAGCGTAT
GTGCCGCAGCGCAGCAGCGTCGATTGGGATTTTCCAGCCAGCGTGCTCGATGTGGTTATGATGGGGCGATATGGCGCGCT
TGGATGGTTCCGCCGCCCAGGAAAACGCGAACACGAACTGGCACACGAGGCGCTGACCCGTGTCGGGATGCAGGAGTTTG
CCCATCGCCAGATCAGCCAGCTATCCGGTGGGCAACAGCAGCGCGTCTTTCTGGCGCGCGCACTGGTGCAGGACGCACAG
GTCTATTTCATGGACGAGCCGTTTCAGGGGGTTGATGCGACCACCGAGCGGGCAATCGTCGGATTGCTCCAGGATTTGCG
CGCCGCCGGAAAAACCGTTGTCGTCGTACACCACGATCTGCAAACAGTCGCCGAGTACTTCGACTGGGTCGCGTTGCTCA
ATGTGCGGTTGGTCGCCAGCGGTCCGGTTGCAGAGGCGTTTACCGAAGCCGCGTTGCGCGCCGCATATGGCGGGCGAATT
GCGTTTCTCGAAGGGCAGTTTCCTGGCGCAGTCGCCGGTGAGCAACGCGCCAGAATTGTCGTTTCACCTTGA

Protein sequence : 
MTSEQLAIQVTDLTVAYRDKPVLWDIDLTVPGGVLMGIIGPNGAGKTTLLKTILGLIRPAAGQVLIYGKPYAEQRRLVAY
VPQRSSVDWDFPASVLDVVMMGRYGALGWFRRPGKREHELAHEALTRVGMQEFAHRQISQLSGGQQQRVFLARALVQDAQ
VYFMDEPFQGVDATTERAIVGLLQDLRAAGKTVVVVHHDLQTVAEYFDWVALLNVRLVASGPVAEAFTEAALRAAYGGRI
AFLEGQFPGAVAGEQRARIVVSP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-45 48
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-45 48
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-45 48
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-45 48
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-45 48
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-36 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 1e-36 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rcas_1723 YP_001431833.1 ABC transporter-like protein BAC0400 Protein 8e-69 66
Rcas_1723 YP_001431833.1 ABC transporter-like protein BAC0350 Protein 1e-45 48
Rcas_1723 YP_001431833.1 ABC transporter-like protein BAC0440 Protein 7e-40 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rcas_1723 YP_001431833.1 ABC transporter-like protein VFG0526 Protein 1e-45 48