Gene Information

Name : Rcas_1590 (Rcas_1590)
Accession : YP_001431701.1
Strain : Roseiflexus castenholzii DSM 13941
Genome accession: NC_009767
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2043897 - 2044685 bp
Length : 789 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1257 ABC transporter related

DNA sequence : 
ATGATGCTTTCTGAACATATTGCCCGCGAACCGGCGCACCTGGAGATCGAGCGCCTGACCGTCGCCTATGGGCGACGGAG
GGTGCTCGATGATATTTCATTTCGTGTGGATTACGGCGAACGTGTGGTGATGGTGGGGCCGAACGGTGCAGGTAAATCGA
CGCTCTTCAAGGCGCTGGTTGGTCTGGTGAAGCCGCAGAGTGGAACTATCCGCATTCACGGGTTACCCCCTGGTGCGCAT
CAGGACTGCGTTGCGTATGTGCCGCAGCGCGAAGAGGTGGACTGGCGCTTTCCGGTCACCGTCACCGATGTGGTGATGAT
GGGGCGTTTCGGGCGGCTCGGCTGGTTCCGGCGCCCAACCCGGGTCGATCGGGCTGCCGTCGAGCGCGGGTTGGAGTTGA
TGGGCATCGCGCACCTTGCGCGCCGTCCCATTGGCGAGTTGTCCGGCGGGCAGCAGCAACGGGTGTTCCTGGCGCGCGCG
CTCGCGCAGGAACCACACATTCTCCTGCTCGATGAGCCGTTCACCGGTGTAGACGCGGCCACTCAGGAGGCAACGCTCAG
CGTGCTCGACGCGCTCCGTAATCAGAAAGTGACGATCATCCTCTCGACGCACGACCTCGGTCTCGCGGCAGCGCGCTTTG
AGCGTGTGCTCCTCATCAATCGGCGGCTGATCGGCGATGGTCCTCCGGCGCAGGCGCTGCGCCGCGACTTGCTGACCGAA
GCATTCGGCGGGCAGGTGCTGACACTGCCGGATGGTTCGGTGCTGGTTGATCAGTGCGCCTGTAATTGA

Protein sequence : 
MMLSEHIAREPAHLEIERLTVAYGRRRVLDDISFRVDYGERVVMVGPNGAGKSTLFKALVGLVKPQSGTIRIHGLPPGAH
QDCVAYVPQREEVDWRFPVTVTDVVMMGRFGRLGWFRRPTRVDRAAVERGLELMGIAHLARRPIGELSGGQQQRVFLARA
LAQEPHILLLDEPFTGVDAATQEATLSVLDALRNQKVTIILSTHDLGLAAARFERVLLINRRLIGDGPPAQALRRDLLTE
AFGGQVLTLPDGSVLVDQCACN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 1e-44 44
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-45 44
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 7e-45 44
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 6e-44 44
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 6e-44 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rcas_1590 YP_001431701.1 ABC transporter-like protein BAC0440 Protein 8e-49 46
Rcas_1590 YP_001431701.1 ABC transporter-like protein BAC0400 Protein 7e-47 45
Rcas_1590 YP_001431701.1 ABC transporter-like protein BAC0350 Protein 4e-45 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rcas_1590 YP_001431701.1 ABC transporter-like protein VFG0526 Protein 4e-45 44