|
Name : Rcas_1494 (Rcas_1494) Accession : YP_001431606.1 Strain : Roseiflexus castenholzii DSM 13941 Genome accession: NC_009767 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : 6.1.1.11 Position : 1910060 - 1911334 bp Length : 1275 bp Strand : - Note : catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA DNA sequence : ATGCTGGACATTCGCCTGATACGTGAGCAACCCGACATGGTCAAAGCGGCGCTTGGGCGGGCAGGCGTCGATCCAGCACA GGTTGACGCTGTGCTGGCATACGACGAACAACGTCGCGCGCTGCTGCGCGAAGTGGAGAAACTGAAAGCCTTGCGCAATG CGGTCTCAAAAGAGATCGGCAAGATGAGCGACGCGGGCGAACGCGACACGAAAATCGCCGAAATGCGCGCCGTCGGCGAC CGCATCGCCGCGCTGGACCGCGAACTCGCTGCGGTGGAAGAGCGGCAGTACGCTGCGCTAATGGAACTGCGCAACCTGCC GCATCCCGCAGTTCCCGACGGACCGGACGAGACCTACAACGTGGTGATTGCGCAGGAAGGTGAACCGCGCGCCTTCGATT TTGCGCCAAAGCCACACTGGGAACTCGGCGAAGCGCTCGACATCATCGATTTCGAGCGGGGCGTCAAACTCTCCGGCTCA CGCTTCTACGTCCTCAAAGGGCTGGGAGCGCGCCTGCAACGCGCCCTGATCCAATGGATGCTCGATCTTCACATCCAACA GGGATACCACGAGGTCTATACACCGTTCGTGGTAAAAGAGCAATGCATGTGGGGCGCGCGCCAGTTGCCCAAGTTCCGTG ACAACCTCTACCGCGACGTGGAGGACGACCTGTGGCTGGTGCCGACCGCCGAGGTGCCGGTCACCAATCTCCACCGCGAC GAGATTCTCGAGGCGGATCAGTTGCCGCTCCGCTATTGCGCCTACACCCCCTGCTTCCGCCGCGAAAAGATGAGCGCCGG GCGCGATGTGCGCGGCATCAAGCGCGGGCACCAATTCGACAAAGTCGAGATGTACATGTTTGTCCACCCCGACACAAGCT ACGACGAACTCGAGAAACTACGCGCCGACGCCGAAGCAACCTGTCGTCTGCTGGGATTGACCTTCCGCACCAAAGAACTC TGCACCGGCGACCTCGGATTTGCCGCCACGCGCACCTACGATATCGAGGTGTGGGCGCCGGGGCAGGGCGAATGGCTCGA AGTCAGCTCCTGCTCGAATGTCGAAGCCTTTCAGGCGCGGGCAGCGAACATTCGCTACCGTTCAGCGCCGGGGGCGCGTC CAGAGTATGTCCATACCCTGAACGGCTCAGGGTTGGGGCTGCCGCGCACGCTGATAGCCATTATGGAGAACTACCAGCAG GCTGATGGCAGCATCATCATTCCTGACGTTCTGCGTCCGTATATGGGGGGGGCTGAGGTTATTCGACGGTCATAA Protein sequence : MLDIRLIREQPDMVKAALGRAGVDPAQVDAVLAYDEQRRALLREVEKLKALRNAVSKEIGKMSDAGERDTKIAEMRAVGD RIAALDRELAAVEERQYAALMELRNLPHPAVPDGPDETYNVVIAQEGEPRAFDFAPKPHWELGEALDIIDFERGVKLSGS RFYVLKGLGARLQRALIQWMLDLHIQQGYHEVYTPFVVKEQCMWGARQLPKFRDNLYRDVEDDLWLVPTAEVPVTNLHRD EILEADQLPLRYCAYTPCFRREKMSAGRDVRGIKRGHQFDKVEMYMFVHPDTSYDELEKLRADAEATCRLLGLTFRTKEL CTGDLGFAATRTYDIEVWAPGQGEWLEVSSCSNVEAFQARAANIRYRSAPGARPEYVHTLNGSGLGLPRTLIAIMENYQQ ADGSIIIPDVLRPYMGGAEVIRRS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 2e-97 | 51 |
