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Name : Rcas_1360 (Rcas_1360) Accession : YP_001431474.1 Strain : Roseiflexus castenholzii DSM 13941 Genome accession: NC_009767 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1738511 - 1740442 bp Length : 1932 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KR domain protein; KEGG: DNA sequence : ATGATGCAACGACTCAAGAATCGGCACTTTTTGATCTTCGATGTGCTGCTCGTGCCGCTGGCAATCTACGTCAGCTTCGT GCTGCGCCTCGAAACGTTCGATCTCAAGACGTACTGGGTGGCATGTGCGCACTTCTGCCTGATGGCAGTCATCGTCACTC CACTGATATTTCGCGCATTCGGCGTCTATCGCCGCTACTGGCGCTACGCTTCGTTCGAGGAAGTGCTGCTGCTCTGCAGT GCAACCTCGCTGGCAATGGGAGCCACTGCGATCCTCCTCACACTGCTCGACATTGTGACGCCGGTGATAGCGACAGTCCC GCGTTCCATTCCATTCATCGTTCCGCCAATCGCCGCATCGCTCGTCAGCATTCCACGATTGCTGGTACGCATCGGCGCAG CGCGCGAGCGCCGCCGCCGCGCCACCGACCGACCTGCGCCTGTGCTGATCATGGGGGCCGGCGATGCTGCATCCATTATT GTGCGAGAGATTCAGCGCAACCCCAGGCTCGGCATGGAGGTTGTCGGGTTGCTGGATGACGATCCGACGAAGCGCGGCTT GCGATTGCACGGCGTCGAGGTGCTTGGCGACCGCCATGCCATTCCATCGCTGGTAGCGCAACATAAAGTACGCCAGGTCA TTATCGCCATGCCGGGCGCGCCAGGGAAAGCGGTGCGCGACATCATGCACATCTGTGAGTCTGTCGGAGTTGCCGTGCGC ATTGTGCCCGGCATGCACGAACTGATCGATGGCACGATCAGCGTCAGCAAACTACGCACCATTCAAATCGAAGACTTGCT CCGCCGCGCGCCGGTGCAGACCGACACAGCCGCAGTGCGCGGGCTGGTTGCCGGGCGACGCGTGCTGGTGACCGGCGGCG GCGGCTCGATTGGAAGCGAACTCTGCCGCCAGTTGCTGCGCTTCGGTCCATCGCATCTCATCGTTCTCGGACACGGCGAG AATAGTGTTTTCGAGATCTGCAATGAACTCGACTGCCTGGCGGAAGCGCACCTTGATCAATCGCCCTGCATTGTACCGGT CATCGCCGATATTCGCGACCTGGAACGGCTGCGCTCCGTTTTTGCCATCCACGCACCCGAACTCGTTTTCCACGCCGCAG CGCACAAACACGTCCCGCTCATGGAAGCGCATCCGGTTGAAGCCATCAGTAACAATGTCGTTGGAACGCGCAATCTGCTT GATGTCGCGCTCGAAACCGGCGTCGAACGTTTTGTGATGATCTCATCGGACAAAGCAGTCAATCCGACGAGCGTTATGGG TGCAACCAAGCGCATCGCCGAAATGCTCGTTCTCGACGCCGCGCGGCGCAGCGGTCGTCCTTTTGTGGCGGTACGTTTCG GCAATGTGCTCGGCAGTCGCGGGAGTGTCGTGCTGACGTTCAAGCGCCAGATTGCAGCAGGGGGACCGGTGACCGTCACC CATCCAGAAATGCGGCGCTATTTCATGACCATTCCCGAAGCCGTGCAACTCGTGCTTCAGGCATCGGTGCTGGGACGCAC GGGTGAGATCTTTATGCTCGACATGGGCGAACCGGTGAAGGTAGTCGATCTGGCGCGCGACATGATCCGTCTATCGGGGC TGGAAGTCGGGCGCGACATCGACATCTGCTTTACGGGGATGCGCCCCGGCGAGAAACTGTTTGAAGAACTGTTCGCCCGT GGCGAAGAGTATCAGCCGACGGCGCACAGCAAAATCTTCATCGCGGCAGGCGCCAGCAACAACATTCCGCTCGCGCTACG CACCGACGTGACTTCACTCGAACGGACGGCATGCACCGGCAACAATGCCGCCATCCGCCGTCTGCTGCGCGACATTGTAC CGGAATACTGCCCACCGGAGTTTCTGCCGCCTGTACCGGTCAATGACAGAACCACGCAGCCCGTGCGGATTCGTCCGTTG CAACCGGCATGA Protein sequence : MMQRLKNRHFLIFDVLLVPLAIYVSFVLRLETFDLKTYWVACAHFCLMAVIVTPLIFRAFGVYRRYWRYASFEEVLLLCS ATSLAMGATAILLTLLDIVTPVIATVPRSIPFIVPPIAASLVSIPRLLVRIGAARERRRRATDRPAPVLIMGAGDAASII VREIQRNPRLGMEVVGLLDDDPTKRGLRLHGVEVLGDRHAIPSLVAQHKVRQVIIAMPGAPGKAVRDIMHICESVGVAVR IVPGMHELIDGTISVSKLRTIQIEDLLRRAPVQTDTAAVRGLVAGRRVLVTGGGGSIGSELCRQLLRFGPSHLIVLGHGE NSVFEICNELDCLAEAHLDQSPCIVPVIADIRDLERLRSVFAIHAPELVFHAAAHKHVPLMEAHPVEAISNNVVGTRNLL DVALETGVERFVMISSDKAVNPTSVMGATKRIAEMLVLDAARRSGRPFVAVRFGNVLGSRGSVVLTFKRQIAAGGPVTVT HPEMRRYFMTIPEAVQLVLQASVLGRTGEIFMLDMGEPVKVVDLARDMIRLSGLEVGRDIDICFTGMRPGEKLFEELFAR GEEYQPTAHSKIFIAAGASNNIPLALRTDVTSLERTACTGNNAAIRRLLRDIVPEYCPPEFLPPVPVNDRTTQPVRIRPL QPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 1e-87 | 43 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 4e-95 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rcas_1360 | YP_001431474.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 4e-76 | 44 |
| Rcas_1360 | YP_001431474.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 1e-85 | 43 |
