Gene Information

Name : ribD (RBAM_021420)
Accession : YP_001421734.1
Strain : Bacillus amyloliquefaciens FZB42
Genome accession: NC_009725
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : H : Coenzyme transport and metabolism
COG ID : COG1985
EC number : 3.5.4.26
Position : 2234933 - 2236048 bp
Length : 1116 bp
Strand : -
Note : riboflavin-specific deaminase RibD

DNA sequence : 
ATGGAAGAATATTATATGAATACGGCAATAGAACTTGCCAGACGCGGTGAAGGACAGACACAGTCCAATCCTCTTGTCGG
CGCTGTCGTCGTCAAAAACGGACAGATCGTCGGAATGGGCGCCCATTTGCAATACGGAGAAGCGCATGCCGAGGTTCACG
CGATTCATATGGCCGGCAGACACGCAAAAGGCGCCGATTTGTATGTGACGCTGGAGCCTTGCAGCCATTACGGAAAAACA
CCGCCATGCGCCGAACTGATAATAAAGTCGGGGATAAAAAGGGTGTTTATCGCTGTGAAAGATCCGAATCCGCTTGTAGC
CGGAAAAGGCATCGGAATGCTGGAAGCAGCGGGCATCGAAGTGAAAACCGGACTTCTCAGGCAGCAGGCAGAAGAGCTGA
ATAAAATGTTTCTTCACTTCATGCGGACCGGACTTCCGTATGTCACCTTGAAAGCGGCCGCGAGCCTTGACGGGAAAACA
GCGACTGAAACCGGTGACAGCAAATGGATTACATCAGAGGCAGCAAGGCTTGATGCCCAGCAATACAGGAAATCGCATCA
AAGCATTCTTGTCGGAGCAGGCACAGTCAAAGCCGATAATCCGAGCCTGACCTGCAGGCTTCCTGATGCGGTGAAGCAGC
CGGTCAGAGTGATTCTCGATACAAAGCTGACCATTCCTGAAACGGCAAATGTGCTCACTGACGGCGCTGCGCCGACATGG
ATATTTACGGCCAAAGGTGCAGACGTGCAAAAGAAAGACCGGCTGACCGCACTCGGAATAAAAGTTATTCCGCTGGAAAC
AGACCGCATTCACGTCCCTGAGGTGCTCAGTATTCTCGCTGAAAACGGCATAATGTCCGTTTATGTGGAAGGAGGAGCAT
CCGTACACGGAAGTTTTGTCAAGGAAGACTGTTTCCAAGAGCTTCATTTCTATTTCGCCCCTAAATTAATCGGAGGAACG
CTTGCTCCCAGCTTGATCTCCGGTGAAGGTTTTCAATCAATGAAAGATGTCCCCCATTTACAATTCACACAAATCACCCA
AATCGGGCCGGATATAAAACTGACGGCCATACCTAAAGATGGAAAGGATGGTGACGATGTTTACAGGAATCGTTGA

Protein sequence : 
MEEYYMNTAIELARRGEGQTQSNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAIHMAGRHAKGADLYVTLEPCSHYGKT
PPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEVKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKT
ATETGDSKWITSEAARLDAQQYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQPVRVILDTKLTIPETANVLTDGAAPTW
IFTAKGADVQKKDRLTALGIKVIPLETDRIHVPEVLSILAENGIMSVYVEGGASVHGSFVKEDCFQELHFYFAPKLIGGT
LAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIPKDGKDGDDVYRNR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00289 YP_008207754.1 Pyrimidine deaminase Not tested AbaR25 Protein 3e-53 43
BJAB0868_00293 YP_008211619.1 Pyrimidine deaminase Not tested AbaR26 Protein 3e-53 43