Gene Information

Name : Xaut_1032 (Xaut_1032)
Accession : YP_001415940.1
Strain : Xanthobacter autotrophicus Py2
Genome accession: NC_009720
Putative virulence/resistance : Virulence
Product : two component sigma54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1185026 - 1186411 bp
Length : 1386 bp
Strand : -
Note : PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: pfl:PFL_4888 sigma-54 dependent DNA-binding response regulator

DNA sequence : 
ATGGCCGCGAAGATACTCATCGTCGACGACGAGGTCCGCCATGGGGAGGTGCTGGAGGCAGCCCTCGCCGAGCGCGGCTT
CGAGGCGACTTCGACCAACACCGTCGCCAAGGCGCTGACCTATTGCACCAGCCACGCGGTGGACCTGGTGCTGAGCGACC
TGCGCATGCCCGGCCAGGGCGGCAGCGACCTGCTGAAGGCGCTTAAGGAGCAGCAGCCCGAGCTGCCGGTGATCATCATG
ACCGCCTACGCCACGGTGCGCGGTGCGGTGGACCTGGTGAAGGACGGCGCCTTCGACTATGTGGCCAAGCCCCTCGACCT
CGACGACGTGGTCGCCACCATGGCCCGCGCGCTGCGACTGAAGGCGGTGGAAAGCGAAAACGCGCGCCTGCGCTCCGAGC
TGGAGGGGCGCTACCGCTTCGACAATCTGGTGGGCGACAGCCCGGCCTTCCGCGACGTGCTGCGCCAGGTGACCGAGGTG
GCGCCGAGCCGGGCCAGCGTGCTGCTTCTTGGCGAGAGCGGCACCGGCAAGGAACTGGTGGCCCGCGCCATCCACTACAA
CAGCCCGCGGCGGGACCTGCCCTTCGTCGCCGTCAACTGCGCCGCCATTCCCGAGACCCTGATCGAAAGCGAGCTGTTCG
GCCATGTGAAGGGCGCCTTCACCGGCGCCACCGGCGCCCGCGAGGGCCGCTTCGCGGCTGCCGACCATGGCACGCTGTTC
CTCGACGAGATCGCCGACATGCCGTTGCCGGTGCAGGCCAAGGTGCTGCGCGCCCTGCAGGAGCAAAGCTTCGAGCCGGT
GGGCAGCAGCAAGAGCGTATCGGTGGACGTGCGGATTATCGCCGCCACCCACAAGGACCTGCAGAAGGAGATCGCTGCCG
GCACCTTCCGCATGGACCTTTACTATCGCCTCGCGGTGTTCCCCATCTCGCTGCCGCCGCTGCGCGAGCGCACCGACGAT
ATCGTGCTGCTCGCCAACCATTTCCTCGCTGCCGCGGCGCGGGACATGGGCAAGCGCATCAAGGGTCTCACCCCCGAGGC
GCAGGCCATGCTGACGCGCTACCGCTGGCCGGGAAACGTGCGCGAACTGCAGAACTGCATGGAGCGCGCCGCCATCGTCG
CGCGGGGCGACCTCGTGGGTGAAGGCGACCTGCTGCTGTTCGAGGCGACCGGCGATGCCGCCGCGATGCCGCACACGCTC
GACGGCGACCTCGACGGCGAGCTCGCCCGCATCGAGCGCGAGTTTGTGCTGAAAGCGCTCAAGGACAACGGCGGCGTGCA
GGCCCGCGCCGCCGAGAAGCTCGGCATCACCGAGCGCAGCCTGTGGCACCGCATCAAGAAGCTGGGCATCAAGATCGACA
AGGTGGCGGGGGCCGGCGATGGTTAG

Protein sequence : 
MAAKILIVDDEVRHGEVLEAALAERGFEATSTNTVAKALTYCTSHAVDLVLSDLRMPGQGGSDLLKALKEQQPELPVIIM
TAYATVRGAVDLVKDGAFDYVAKPLDLDDVVATMARALRLKAVESENARLRSELEGRYRFDNLVGDSPAFRDVLRQVTEV
APSRASVLLLGESGTGKELVARAIHYNSPRRDLPFVAVNCAAIPETLIESELFGHVKGAFTGATGAREGRFAAADHGTLF
LDEIADMPLPVQAKVLRALQEQSFEPVGSSKSVSVDVRIIAATHKDLQKEIAAGTFRMDLYYRLAVFPISLPPLRERTDD
IVLLANHFLAAAARDMGKRIKGLTPEAQAMLTRYRWPGNVRELQNCMERAAIVARGDLVGEGDLLLFEATGDAAAMPHTL
DGDLDGELARIEREFVLKALKDNGGVQARAAEKLGITERSLWHRIKKLGIKIDKVAGAGDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
norR ABD94719.1 putative nitric oxide reductase transcriptional regulator Not tested ExoU island B Protein 1e-59 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Xaut_1032 YP_001415940.1 two component sigma54 specific Fis family transcriptional regulator BAC0467 Protein 3e-91 47
Xaut_1032 YP_001415940.1 two component sigma54 specific Fis family transcriptional regulator BAC0089 Protein 1e-92 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Xaut_1032 YP_001415940.1 two component sigma54 specific Fis family transcriptional regulator VFG1214 Protein 2e-83 45
Xaut_1032 YP_001415940.1 two component sigma54 specific Fis family transcriptional regulator VFG1248 Protein 2e-65 42
Xaut_1032 YP_001415940.1 two component sigma54 specific Fis family transcriptional regulator VFG1249 Protein 1e-73 41