Gene Information

Name : Plav_0928 (Plav_0928)
Accession : YP_001412208.1
Strain : Parvibaculum lavamentivorans DS-1
Genome accession: NC_009719
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 994875 - 995546 bp
Length : 672 bp
Strand : +
Note : PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: atc:AGR_C_1778 PopP protein

DNA sequence : 
ATGCGGCTCTTGGTTGTCGAAGACGATCCCGATCTCAATCGGCAGCTTGTCAGCGCGCTTGAGGACGCCGGATATGTGGT
GGACAGCGCGAAGGACGGCGAGGAGGGGCATTATCTCGGTGATACAGAGCCCTATGACGCTGTCGTTCTCGACCTCGGCC
TGCCGGAAATGGACGGCGTAACGGTGCTGGAAAAATGGCGCCGCGACGGGCGCGTCATGCCTGTGCTGATCCTCACAGCA
CGCGACCGCTGGAGCGACAAGGTTGCCGGGTTCGACGCGGGCGCGGACGATTACGTAGCGAAGCCGTTTTTCATGGAGGA
AGTTCTGGCGCGCCTGCGGGCCTTGCTCAGACGCGCTACGGGACATGCCTCCAGCGAACTGGAATGCGGCCCCGTTCGGG
TCGATACACGCAGCTCCCGCGTCACTGTGAACGGCCGCGCGATAAAGCTCACCTCCCTCGAATACCGGCTTCTTTCCTAC
ATGATGCACCATCAGGGCCGGGTGATTTCGCGAACGGAACTCGTTGAACATCTCTACGACCAGGATTTCGATCGCGATTC
CAATACAATCGAGGTCTTTGTCGGACGGCTCCGCCGTAAGCTCGGCAAGGACGTGATCGAAACCGTACGCGGTCTGGGCT
ACCGGCTGGCGGCACCTGAAGATGCGGTCTGA

Protein sequence : 
MRLLVVEDDPDLNRQLVSALEDAGYVVDSAKDGEEGHYLGDTEPYDAVVLDLGLPEMDGVTVLEKWRRDGRVMPVLILTA
RDRWSDKVAGFDAGADDYVAKPFFMEEVLARLRALLRRATGHASSELECGPVRVDTRSSRVTVNGRAIKLTSLEYRLLSY
MMHHQGRVISRTELVEHLYDQDFDRDSNTIEVFVGRLRRKLGKDVIETVRGLGYRLAAPEDAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 5e-25 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plav_0928 YP_001412208.1 two component transcriptional regulator NC_002516.2.879194.p Protein 4e-38 49
Plav_0928 YP_001412208.1 two component transcriptional regulator CP000647.1.gene1136. Protein 2e-35 46
Plav_0928 YP_001412208.1 two component transcriptional regulator BAC0530 Protein 2e-35 46
Plav_0928 YP_001412208.1 two component transcriptional regulator CP001918.1.gene2526. Protein 2e-34 45
Plav_0928 YP_001412208.1 two component transcriptional regulator CP001138.1.gene1939. Protein 2e-35 45
Plav_0928 YP_001412208.1 two component transcriptional regulator CP000034.1.gene2022. Protein 3e-35 44
Plav_0928 YP_001412208.1 two component transcriptional regulator NC_002695.1.913289.p Protein 1e-34 44
Plav_0928 YP_001412208.1 two component transcriptional regulator CP004022.1.gene1005. Protein 4e-38 43
Plav_0928 YP_001412208.1 two component transcriptional regulator BAC0487 Protein 2e-28 42
Plav_0928 YP_001412208.1 two component transcriptional regulator BAC0083 Protein 4e-26 41
Plav_0928 YP_001412208.1 two component transcriptional regulator BAC0125 Protein 3e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plav_0928 YP_001412208.1 two component transcriptional regulator VFG0475 Protein 2e-35 45
Plav_0928 YP_001412208.1 two component transcriptional regulator VFG1390 Protein 2e-23 42
Plav_0928 YP_001412208.1 two component transcriptional regulator VFG0473 Protein 4e-29 41