Gene Information

Name : rph (Plav_3580)
Accession : YP_001414835.1
Strain : Parvibaculum lavamentivorans DS-1
Genome accession: NC_009719
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : -
Position : 3827982 - 3828698 bp
Length : 717 bp
Strand : +
Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs

DNA sequence :
ATGCGCCCTTCCGGACGCCAGCCGCAGGAAATGCGGACCGTCAGCTTCGAGCCCGGCGTTGCCAAACATGCCGAAGGCTC
CTGCCTCGTCCGCTTCGGCGACACCCATGTGCTGTGCACCGCCAGCCTTGAAGAGCGTGTCCCGCCCTTCCTGAAGGGCG
GCGGCCAGGGCTGGGTCACGGCGGAATACGGCATGCTGCCGCGCTCCACCCATGAGCGCATGCGCCGCGAGGCCGCGCAA
GGCAAGCAATCCGGCCGCACCCAGGAAATCCAGCGTCTCGTCGGCCGCTCGCTGCGCTCGGTGGTCGATCTGAAGGCGCT
TGGCGAACGCCAGATCAGCGTCGATTGCGACGTCCTTCAGGCCGATGGCGGCACGCGCACCGCCTCGATCACCGGCGCCT
GGGTCGCGCTTCATCAATGTATCGAATGGATGCGCGCCCGCTCGATGATTTCGGCGCCTGTCCTGAAGGATCATGTCGCG
GCAATTTCCTGTGGCATCTACCAAGGCGTTCCCGTGGTCGATCTCGACTATGCGGAGGATTCGACCGCCGACACCGACGC
GAATTTCGTCATCACCGGCAAGGGCGGCATCTGCGAGATCCAGGGCACGGCCGAAGGCGAACCCTTCAGCGACGAGGAGT
TCCTGTCGCTGCTGGCGCTGGCGAAAACCTCCATCGCAGATCTCGTGCGGCGCCAGAAGGAAGCGGTATCGGCATGA

Protein sequence :
MRPSGRQPQEMRTVSFEPGVAKHAEGSCLVRFGDTHVLCTASLEERVPPFLKGGGQGWVTAEYGMLPRSTHERMRREAAQ
GKQSGRTQEIQRLVGRSLRSVVDLKALGERQISVDCDVLQADGGTRTASITGAWVALHQCIEWMRARSMISAPVLKDHVA
AISCGIYQGVPVVDLDYAEDSTADTDANFVITGKGGICEIQGTAEGEPFSDEEFLSLLALAKTSIADLVRRQKEAVSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 1e-52 49