Gene Information

Name : Plav_3016 (Plav_3016)
Accession : YP_001414280.1
Strain : Parvibaculum lavamentivorans DS-1
Genome accession: NC_009719
Putative virulence/resistance : Resistance
Product : beta-lactamase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2602
EC number : -
Position : 3218705 - 3219499 bp
Length : 795 bp
Strand : -
Note : PFAM: penicillin-binding protein transpeptidase; KEGG: mca:MCA2220 beta-lactamase

DNA sequence :
ATGGGTTTGGCTTTGTTGCGGGCGGGACTCGCCGCCACTCTTCTTTTTGCCGTTGCCGGAAATGCGGCGGCAGGCGAACG
CACCGATCTCGAAACGCTGTTCGAGGCCGAGGGCGTGAACGGCACTTTCGTTCTTTTCGATGTGGAGAAGGATGAACTCA
CGGCGGTCGATGCCGAACGCGCGGAACGGCGCTTTCCACCCGCTTCGACCTTCAAGATCGCCAACAGCCTGATCGCGCTT
GAAACCGGCGCCGTGGCGGACGTGGACGAGGTGCTGCCCTATGGCGGCAAGCCGCAACCCTTCAAGCAATGGGAGCGGGA
CATGAGCCTGAGGAAGGCCATCGCCGTTTCAAACGTGCCGGTCTATCAGGAAGTCGCGCGGCGGATCGGCCTTGAGCGCA
TGAAAGAGATGCTGTCAAAGCTCGATTACGGAAACCGCGATCCGGGAACGGTCGTCGACCGCTTCTGGCTCGATGGGCCG
CTTGAGATCAGCGCCAACGAACAGGCGCGCTTCGTCACGGCGCTTGCGACGAACACGTTGCCGCTGTCGAACCGCAGCCA
GGAAATGGTGCGCGAGATATTGCTGATGGAAGAGATCGGCGGCGCGAAGCTCTACGGCAAGACCGGCTGGCTCTTCCACG
ACGACGAAGTGGATATCGGCTGGTTCGTGGGCTGGGTGGAGCGCGAGGGAAAGATTTACAGCTTCGCGCTCAACATCGAC
ATGGATGATAAGGAACAGGTCGGTTTGCGCGTGCCGCTGGCGAAGAAGCTGCTGCGGGAACTGGATGTGCTCTGA

Protein sequence :
MGLALLRAGLAATLLFAVAGNAAAGERTDLETLFEAEGVNGTFVLFDVEKDELTAVDAERAERRFPPASTFKIANSLIAL
ETGAVADVDEVLPYGGKPQPFKQWERDMSLRKAIAVSNVPVYQEVARRIGLERMKEMLSKLDYGNRDPGTVVDRFWLDGP
LEISANEQARFVTALATNTLPLSNRSQEMVREILLMEEIGGAKLYGKTGWLFHDDEVDIGWFVGWVEREGKIYSFALNID
MDDKEQVGLRVPLAKKLLRELDVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 4e-42 42
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 4e-42 42
bla OXA-10 CAJ77047.1 Oxacillinase Not tested AbaR1 Protein 2e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Plav_3016 YP_001414280.1 beta-lactamase AY306130.1.gene1.p01 Protein 1e-63 57
Plav_3016 YP_001414280.1 beta-lactamase AY423074.1.gene1.p01 Protein 2e-47 46
Plav_3016 YP_001414280.1 beta-lactamase EU086834.1.gene1.p01 Protein 1e-45 45
Plav_3016 YP_001414280.1 beta-lactamase JF273470.1.gene1.p01 Protein 9e-47 45
Plav_3016 YP_001414280.1 beta-lactamase EU086830.1.gene1.p01 Protein 8e-46 45
Plav_3016 YP_001414280.1 beta-lactamase AY619003.1.gene1.p01 Protein 3e-43 43
Plav_3016 YP_001414280.1 beta-lactamase NC_009085.4918533.p0 Protein 1e-34 42
Plav_3016 YP_001414280.1 beta-lactamase AM412777.1.gene1.p01 Protein 7e-42 42
Plav_3016 YP_001414280.1 beta-lactamase AM932669.1.gene2.p01 Protein 3e-42 42
Plav_3016 YP_001414280.1 beta-lactamase HQ700343.1.gene1.p01 Protein 4e-38 41
Plav_3016 YP_001414280.1 beta-lactamase NC_010410.6002874.p0 Protein 2e-42 41
Plav_3016 YP_001414280.1 beta-lactamase U37105.2.gene2.p01 Protein 2e-42 41
Plav_3016 YP_001414280.1 beta-lactamase HM015773.1.gene6.p01 Protein 6e-38 41
Plav_3016 YP_001414280.1 beta-lactamase AY500137.1.gene1.p01 Protein 2e-38 41
Plav_3016 YP_001414280.1 beta-lactamase JN205800.1.gene6.p01 Protein 1e-37 41
Plav_3016 YP_001414280.1 beta-lactamase HM113559.1.gene1.p01 Protein 1e-41 41
Plav_3016 YP_001414280.1 beta-lactamase AY445080.1.gene1.p01 Protein 6e-42 41
Plav_3016 YP_001414280.1 beta-lactamase HM113558.1.gene1.p01 Protein 2e-41 41
Plav_3016 YP_001414280.1 beta-lactamase X58272.1.gene1.p01 Protein 4e-41 41