Gene Information

Name : Plav_0245 (Plav_0245)
Accession : YP_001411525.1
Strain : Parvibaculum lavamentivorans DS-1
Genome accession: NC_009719
Putative virulence/resistance : Unknown
Product : ABC transporter-like protein
Function : -
COG functional category : R : General function prediction only
COG ID : COG4172
EC number : -
Position : 264173 - 265801 bp
Length : 1629 bp
Strand : -
Note : PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: mes:Meso_4080 ABC transporter related

DNA sequence :
ATGAGCGCGCCGCTGGTAGAAGTGAAAAATCTCTCTGTCGGCTTCCGCATGGACGGCCAAGAAACGATTGCCGTAAACCG
CATATCGTTCGACATCAAGCATGGTGAAACCGTAGCGCTGGTCGGTGAATCCGGATCGGGGAAATCCGTTTCCGCGCTAT
CGATCATGCAGCTCCTGTCCTATCCGCAAGCCTTTCATCCAAATGGCGAAATCTTCTTTGGCGGACAAAATCTCATTGGA
GCCGACGAAAAGACCATGCGCCGCATCCGCGGCAACAAGATAACCATGGTTTTTCAGGAGCCTCTTACCTCCCTCAATCC
ACTCCATACAATCGAACGGCAGGTTGGCGAGGTGTTGAGTGAGCACAAAGGGATGCGCGGTCCTGCCGTGCGCGCGCGCG
TACTCGACCTGTTGCGGAAAGTCGGCATCCCCAATGCGGAGGAAAGACTCGACGCCTATCCGCATCAGCTGTCGGGCGGA
CAACGCCAGCGCGTCATCATCGCCATGGCGCTTGCCAATGAGCCGGACCTGCTGATCGCCGACGAGCCGACAACGGCACT
CGACGTTACGGTTCAGGCACAGATTCTTGAGCTGCTGAAGGATTTGAAACGCGAGATGGGGATGGCGCTACTTCTCATCA
CGCACGATCTCGGCATTGTCAGGAAGATGGCAGACCGCGTCTTCGTCATGACCAAGGGTGAGATCGTGGAGCGCGGGCCG
ACGGAACAGATATTCACCACACCCAAGCATCCCTACACGCAGCACCTCCTTGCCTCAGAACCGAAAGGACGCTCTCTCGG
CGCGCCGAAGGACGGCCCTGTCGTCATGGAAGCCGAAAATCTGAAGGTCTGGTTTCCGATCAGACGCGGTCTGCTCCGGC
GTACGGTAGGACATATAAAGGCTGTCGACGACGTCTCACTTACCCTGCGCGAGGGCCGGACGCTCGGCGTTGTTGGAGAA
TCCGGATCGGGCAAGACAACTTTGGGCCTCGCACTCATGCGGTTGCTTTCAAGTGAAGGCGACATTCGCTTCAATGCAAA
ATCCATTCAGGGGCTGAAATCCAAAGAGCTAAGGCCGCTTCGCCGGGATATGCAGATCGTCTTCCAAGATCCCTTTGGCT
CGCTCAGTCCGCGCATGTCCGTCTCGGATATTGTGAGCGAGGGCCTCCGCATTCAGCAACCGGGGCTCGCGGCAGCCGAG
CTGCGAATGCATGTGTCTGAAGCTCTTGGCGAAGTTGGCCTCGACCCGGAAATGCAGGACCGGTATCCGCACGAATTTTC
CGGTGGCCAGCGACAGCGCATTGCCATTGCGCGCGCGATGGCACTAAAGCCGCGTTTTGTAATGCTCGACGAGCCTACCA
GTGCCCTGGACATGTCCGTGCAGGCCCAAATCGTCGACCTTCTGCGCGATCTGCAGAGGCGGTATAATCTCGCCTATCTC
TTCATCAGCCACGATTTGAAGGTGGTGAGAGCGCTTGCGGACGACATCATCGTCATGCGGGGGGGCAAAGTTGTAGAGAC
GGGGACGGCCGATCAGGTTTTCGATGCGCCGAAAACCGAATACACCAAGGCGTTGATGGCGGCGGCATTCGATCTTGCCG
TCACGCCGGCAGGGGCCGTTTCCGAGTAG

Protein sequence :
MSAPLVEVKNLSVGFRMDGQETIAVNRISFDIKHGETVALVGESGSGKSVSALSIMQLLSYPQAFHPNGEIFFGGQNLIG
ADEKTMRRIRGNKITMVFQEPLTSLNPLHTIERQVGEVLSEHKGMRGPAVRARVLDLLRKVGIPNAEERLDAYPHQLSGG
QRQRVIIAMALANEPDLLIADEPTTALDVTVQAQILELLKDLKREMGMALLLITHDLGIVRKMADRVFVMTKGEIVERGP
TEQIFTTPKHPYTQHLLASEPKGRSLGAPKDGPVVMEAENLKVWFPIRRGLLRRTVGHIKAVDDVSLTLREGRTLGVVGE
SGSGKTTLGLALMRLLSSEGDIRFNAKSIQGLKSKELRPLRRDMQIVFQDPFGSLSPRMSVSDIVSEGLRIQQPGLAAAE
LRMHVSEALGEVGLDPEMQDRYPHEFSGGQRQRIAIARAMALKPRFVMLDEPTSALDMSVQAQIVDLLRDLQRRYNLAYL
FISHDLKVVRALADDIIVMRGGKVVETGTADQVFDAPKTEYTKALMAAAFDLAVTPAGAVSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cpfrc_01561 YP_003783961.1 hypothetical protein Not tested PiCp 6 Protein 1e-79 43
oppDF2 YP_005686002.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 1e-79 43
oppDF2 YP_005681814.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 1e-79 43
oppDF2 YP_005683914.1 Oligopeptide transport ATP-binding protein OppD Not tested PiCp 6 Protein 1e-79 43
dppD YP_005160017.1 putative peptide ABC transport system ATP-binding protein Not tested Not named Protein 1e-91 43