Gene Information

Name : Plav_1013 (Plav_1013)
Accession : YP_001412293.1
Strain : Parvibaculum lavamentivorans DS-1
Genome accession: NC_009719
Putative virulence/resistance : Unknown
Product : K+-transporting ATPase subunit B
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2216
EC number : -
Position : 1105141 - 1107258 bp
Length : 2118 bp
Strand : +
Note : TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_4549 potassium-translocating P-type ATPas

DNA sequence :
ATGGAAACGTCGACCATGCGCAAGAGGATGCCGGTTTCGGCGCTTGCCGATTTGAAGATCATAGGCCCCGCGATCGGCTT
GGCTTTCCGGAAGCTGGACCCTCGGACGCTCGTGAAGAACCCCGTCATGTTCGTGGTCGAGGTCGTCACGGTACTGACGA
CTGTCCTCTTTCTGCGCGACCTGGTCGCTGGCGGAGCGGATCTGGGCTTCACCTTCCAAATCATCCTCTGGCTCTGGTTT
ACGGTGCTGTTCGCGAACTTTGCCGAGGCCGTGGCGGAAGGCCGCGGCAAGGCGCAGGCCGACACGCTCAGGCAGACAAG
GACGGAAACGACGGCAAAGCGCCTGCTCCAGCCGGACAACCGCGAATTGCACGAAAGCCTCCCGGCCGACCTGCTTCAGC
CGGGCGATCTGGTGCTGGTCGAGGCGGGTGACATCATTCCCGGCGACGGCGAGGTGATCGACGGAATGGCCTCGGTCAAC
GAAGCGGCGATCACGGGTGAATCCGCTCCCGTCATTCGCGAATCCGGCGGCGACCGGTCGGCCGTCACGGGTGGCACCAC
GGTCATCTCGGACCGGATCGTGGTGCGGATCACCTCGGCGAAGGGGTCGTCCTTTCTCGATCGCATGATCGCCCTGGTCG
AGGGCGCGCAGCGGCACAAGACGCCGAACGAAGTTGCACTCAACGTCCTGCTTGCCGGCATGACCATCATCTTCGTCATC
GCCACGGCGACCATTCCGGCCTTCGTTACCTATGCCGGCGGCTCCGTACCGGTCGTGGTCGTGGTTGCGTTGTTCGTGAC
GCTCATCCCGACCACCATCGGCGCCTTGCTGTCCGCCATCGGCATCGCGGGCATGGACCGTCTCGTCCGGTTCAACGTGC
TCGCCATGTCCGGCCGCGCGGTTGAGGCAGCGGGCGACGTCGATACGCTTCTCCTCGACAAGACCGGCACCATCACGCTC
GGCAATCGGCAGGCGACGGAATTCAGGCCGTTGCGCGGGGTCAGCGAGCGGGAACTTGCCGATGCGGCGCAGCTCGCCTC
GCTTGCTGACGAGACACCGGAAGGTCGCTCCATCGTCGTGCTCGCCAAGGAGACGTACGGCATTCGTGGTCGCAATCTGG
CGGAACTCAAAGCCAACTTCTTCCCTTTCACCGCGCAGAGCCGCATGAGCGGGGTCGAAGTCGACGGCTCCTGGACCCGT
AAGGGCGCGGTCGATGCAATCCTCAACCACCTCAATGCATCGCCCACCACAGCAAATCCAGCCGGCATCGTTCGCCCGCA
GCAGCCCGCGCTCGCCGCCGACGCGGTGCATGAGATCAACGCGATTGCCGAGGCAGTCGCAAAATCGGGCGGCACGCCGC
TGGCTGTCGCCAGAGATGGGCGCCTTCTCGGCATCGTCCACCTCAAGGACATTGTGAAGGGCGGCATCCGCGAGCGCTTC
GCCGAGCTTCGGCGCATGGGTATCCGGACCATCATGATCACCGGCGACAACCCGATGACGGCGGCGGCGATCGCGGCCGA
AGCCGGCGTCGACGACTTCCTCGCCGAAGCAACGCCCGAAGACAAGCTGAAGCTCATCCGGGAAGAACAGGCCAAGGGCA
AGCTCGTCGCCATGTGCGGCGACGGCACCAACGATGCGCCGGCTCTCGCCCAAGCCGATGTCGGGGTGGCGATGAACACG
GGCACGCAGGCCGCCCGCGAGGCCGGCAACATGGTCGACCTCGATTCCAATCCGACCAAGCTGATCGAGATCGTCGAGAT
CGGCAAGCAGTTGCTGATGACCCGTGGCTCGCTCACCACTTTCTCGATTGCCAATGACGTCGCGAAATATTTCGCGATCA
TCCCGGCGATGTTCCTTGCCTTCTACCCGCAGCTCGGCGCGCTCAATGTCATGAATCTCGCCAGCCCGCAAAGTGCGATC
CTGTCGGCCATCATTTTCAACGCCGTCGTCATCATCGGGCTCATTCCGCTGGCATTGAAGGGCGTCGCCTACCGCGCCAT
CGGCGCCGGCCCGCTGTTGCGCCGCAACCTGCTGATCTACGGCCTTGGCGGGCTGATCGTACCCTTCGCCGGAATCAAGC
TCATCGACATGATCGTGACCACCCTGCATCTCGTCTGA

Protein sequence :
METSTMRKRMPVSALADLKIIGPAIGLAFRKLDPRTLVKNPVMFVVEVVTVLTTVLFLRDLVAGGADLGFTFQIILWLWF
TVLFANFAEAVAEGRGKAQADTLRQTRTETTAKRLLQPDNRELHESLPADLLQPGDLVLVEAGDIIPGDGEVIDGMASVN
EAAITGESAPVIRESGGDRSAVTGGTTVISDRIVVRITSAKGSSFLDRMIALVEGAQRHKTPNEVALNVLLAGMTIIFVI
ATATIPAFVTYAGGSVPVVVVVALFVTLIPTTIGALLSAIGIAGMDRLVRFNVLAMSGRAVEAAGDVDTLLLDKTGTITL
GNRQATEFRPLRGVSERELADAAQLASLADETPEGRSIVVLAKETYGIRGRNLAELKANFFPFTAQSRMSGVEVDGSWTR
KGAVDAILNHLNASPTTANPAGIVRPQQPALAADAVHEINAIAEAVAKSGGTPLAVARDGRLLGIVHLKDIVKGGIRERF
AELRRMGIRTIMITGDNPMTAAAIAAEAGVDDFLAEATPEDKLKLIREEQAKGKLVAMCGDGTNDAPALAQADVGVAMNT
GTQAAREAGNMVDLDSNPTKLIEIVEIGKQLLMTRGSLTTFSIANDVAKYFAIIPAMFLAFYPQLGALNVMNLASPQSAI
LSAIIFNAVVIIGLIPLALKGVAYRAIGAGPLLRRNLLIYGLGGLIVPFAGIKLIDMIVTTLHLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0088 AAM75291.1 EF0088 Not tested Not named Protein 2e-170 60
kdpB NP_814334.1 potassium-transporting ATPase subunit B Not tested Not named Protein 3e-170 60
kdpB YP_251949.1 potassium-transporting ATPase subunit B Not tested SCCmec Protein 5e-141 56
SAR0071 YP_039539.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 4e-140 55
kdpB(SCCmec) NP_370597.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 4e-140 55
kdpB NP_373310.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 4e-140 55
kdpB YP_190029.1 potassium-transporting ATPase subunit B Not tested Type-II SCCmec Protein 4e-140 55
kdpB BAA82181.1 potassium-transporting ATPase(B chanin) Not tested Type-II SCCmec Protein 3e-140 55