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Name : Fnod_1494 (Fnod_1494) Accession : YP_001410994.1 Strain : Fervidobacterium nodosum Rt17-B1 Genome accession: NC_009718 Putative virulence/resistance : Unknown Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1622396 - 1624216 bp Length : 1821 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domai DNA sequence : TTGAAGTCTAAAAAAATTGATAATTTTCTAAAACTCTTTTCGAGTAGAAATTTTTTGCTCTTTCTAATAGATATCACGCT TTTAACATTAGCTGGCTTGAATGCATTGTTTGTAAGATTTGGATTCGACTTTTTAGAAATGTCAAAGTATTCATCCGGGG TTTTTGTCCTTGTAATAATAACAATTATATCGAACCTTTTAAATGGTACTTACCGCATTGTCTGGCGTTATGCAACACCA AAAGATTTGATTGTTCTACTAAGAGGTCTGTTTATTGGTTATGCTTTCACACTAATATTCATACATTTCACAAGATTGGT CGTTCTTCCACGTTCCGTTGGAATGCTTACCTTCCTTGGTAGCTATTTTCTCCTATTAAGTGCAAGGATAATTTATCAAT ATCTGTTAAGTTGGAAACGAAAAAGCGAAAAAAGAATAGCTATAATAGGTGCCGGTGATGCTGGTGTCATATTATTAAAC GAAATAAAAAGAACAAACTACGGTACCGTTGTCGCCTTTTTCGATGACGATACACAAAAAATAGGAAAATACGTTGCCGG TGTAAAGGTTTTGGACTCTGTAGACTCAATAAATAATTACATCGATAAGCTTGAAATTGATGAAATACTAATAGCTATAC CCTCTGCTTCAAAACAAGTCATGAGCAGAATAATCTCAACAATAGATACAGAAAAAGTTAAACTAAAAACTTTCCCTTCA ATAACCGAATTTTTAGATAGAAATCCAACAATAACAGATTTACGTGAAATTTCCTTACAAGATATTGTTGGAAGGGAACC AGTAAGTGTTGACATAGACTCTATAAGCAAATACTTAACAGGAAAAACAATTCTAATAACCGGCGCCGGTGGTAGTATCG GTTCTGAAATTTCAAGGCAAGTTTGTAAGTTTTCTCCAAAAAAAGTAGTCTTAGTTGGGCGAGGAGAAAATAGCATATAT GAAATTTACAACGAATTGAAAGAGAAATATTACGAACTCGATATAGTGCCAATAATATCAGACGTTACAGACAAAAACAT GATGGAAAAAATTTTCAAAACTCATAGGCCGGATATTGTCTTCCACGCCGCTGCACACAAACATGTATTTTTTATGCAAA ACAATCTTTACGAAGCACTTAGAGTAAATGTATTAGGCACCATAAACCTTGCAAAATTATCTTGCAACTACAATGTTGAA AAATTCGTGTTTATATCCACCGACAAAGCAGTTCATCCAACTTCATATATGGGTACAAGTAAAAGATTAGCGGAACTTTA CTTACTCTCAATACCAGATACATGCAAGACAGATTTTTCGATAGTAAGATTCGGAAATGTCATAGGCAGCAGAGGCAGTG TGCTTTGGAAATTCAAAAAACAAATAGAAAACGATGAACCTGTAACAATAACTGATCCAAGAATGAAACGTTATTGGATG AGCATCCCAGAAGCCGTGTCACTCGTAATTCAAGCGGGAGCTTTATCCACAAATAGAGAACTATACGTCCTTGATATGGG AGAGCAGATTCCCGTTGAAGAAGTAGCAAAAGCCCTTGCCAAGATTATGGGAAAACAAAATATAAAAATAAAATACACGG GCGCAATTCCAGGAGAAAAGCTTGAGGAAGAACTTTTCTACGAATACGAAAAACCAGAAAAAACACAACATCCAAAAATA ATGCGTGTAGAATACAATAATTTAAAAAAAATACTCCCTGAAGAATTTGAAAACAAAATCTTAGAAATTATGAACAAATA CATAGAAGGCCATGAAAGAGAAGCAGAAAATATGCTTTACGAAATATTAGAAATAAACTAA Protein sequence : MKSKKIDNFLKLFSSRNFLLFLIDITLLTLAGLNALFVRFGFDFLEMSKYSSGVFVLVIITIISNLLNGTYRIVWRYATP KDLIVLLRGLFIGYAFTLIFIHFTRLVVLPRSVGMLTFLGSYFLLLSARIIYQYLLSWKRKSEKRIAIIGAGDAGVILLN EIKRTNYGTVVAFFDDDTQKIGKYVAGVKVLDSVDSINNYIDKLEIDEILIAIPSASKQVMSRIISTIDTEKVKLKTFPS ITEFLDRNPTITDLREISLQDIVGREPVSVDIDSISKYLTGKTILITGAGGSIGSEISRQVCKFSPKKVVLVGRGENSIY EIYNELKEKYYELDIVPIISDVTDKNMMEKIFKTHRPDIVFHAAAHKHVFFMQNNLYEALRVNVLGTINLAKLSCNYNVE KFVFISTDKAVHPTSYMGTSKRLAELYLLSIPDTCKTDFSIVRFGNVIGSRGSVLWKFKKQIENDEPVTITDPRMKRYWM SIPEAVSLVIQAGALSTNRELYVLDMGEQIPVEEVAKALAKIMGKQNIKIKYTGAIPGEKLEEELFYEYEKPEKTQHPKI MRVEYNNLKKILPEEFENKILEIMNKYIEGHEREAENMLYEILEIN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 5e-71 | 43 |
