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Name : CHAB381_0666 (CHAB381_0666) Accession : YP_001406247.1 Strain : Campylobacter hominis ATCC BAA-381 Genome accession: NC_009714 Putative virulence/resistance : Virulence Product : VI polysaccharide biosynthesis protein VipA/tviB Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0677 EC number : 1.1.1.- Position : 611803 - 613074 bp Length : 1272 bp Strand : + Note : identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 DNA sequence : ATGTTAAATTTAAAAGATAAAATCATAGCTGTTGTTGGGCTTGGATATGTTGGAATGCCTTTGCTTAACGCATTTTCCAA AAAATACAAAACAATCGGATATGACATAAATCAAAAAAGAGTTGAAGAGCTTAAAAGTGGCGTAGATAGGACGCTTGAAT TAAATAACAGTCAGTTAAAAGAAATGGATACTTTTTATACTACTGATATAAATGATCTAAAATGTGCAAATATATTTATC GTGACGGTTCCTACGCCGATTGATTCTAAAAATAAGCCGGATCTTACACCACTTATAAAATCAAGTGAAAGCATAGGAAA AGCGTTAAATAAAGGTGATATAGTAATATATGAAAGTACAGTTTATCCTGGTGTTACTGAAGAAATTTGCGTACCTTGCT TGGAAAAAACATCAGGACTTAAATTTAATATTGACTTTTTTTGCGGATATTCGCCCGAAAGAATAAATCCTGGTGATAAA GAACACACTGTATCTAAAATTTTAAAAGTTACAAGCGGCAGCACGCCTGAAATTGCCGATGTTGTAGATGCGCTTTATAA AAGTATAATAACTGCAGGAACTTTAAAAGCAAGCAGCATAAAAGTAGCAGAAGCGAGTAAAGTCATAGAAAATACTCAAA GAGACGTAAATATTGCGCTTATAAACGAGCTTGCTCTTATTTTTGATGCGATGAATATTGATACGAATGAAGTTATTGAA GCGGCTTCAACTAAGTGGAATTTTATCAAGTTAAAACCAGGGCTTGTCGGAGGTCACTGCATAGGTGTAGATCCGTATTA TCTCACATATAAAGCCGAAGAGCTTGGATATAAACCGAATTTAATTTTAAACGCAAGACACATAAATAATTCAATGGCAG GTTTTATAGCAAACAAAACTATAAAAACAATGATAGATAACGATATTAAAATTAAAGGCTCAAACGTTCTTGTTTTGGGT GTTACATTTAAAGAAAATTGCCCTGATTTAAGAAATACAAAGGTTTTAAATATAGTGGAAAATTTGGAAGAATATGGCAT AAATGTAGATATTTATGATCCTTGGGTAGATACAAATGAATCAAATATCACTTTCAATCACGAAATTATCGCAAATCCTT TCAAGAATAGCAAAAAATACGACGCTATAATTGTAGCTGTAGCTCATAATGAGTTTAAAAATTTAAAAGATAGCGATTAT GATAAAATTTTAAATCAACATATCATAATTGATATAAAAGGTATTGTAAATAAGCCGACTTGGAGATTATAA Protein sequence : MLNLKDKIIAVVGLGYVGMPLLNAFSKKYKTIGYDINQKRVEELKSGVDRTLELNNSQLKEMDTFYTTDINDLKCANIFI VTVPTPIDSKNKPDLTPLIKSSESIGKALNKGDIVIYESTVYPGVTEEICVPCLEKTSGLKFNIDFFCGYSPERINPGDK EHTVSKILKVTSGSTPEIADVVDALYKSIITAGTLKASSIKVAEASKVIENTQRDVNIALINELALIFDAMNIDTNEVIE AASTKWNFIKLKPGLVGGHCIGVDPYYLTYKAEELGYKPNLILNARHINNSMAGFIANKTIKTMIDNDIKIKGSNVLVLG VTFKENCPDLRNTKVLNIVENLEEYGINVDIYDPWVDTNESNITFNHEIIANPFKNSKKYDAIIVAVAHNEFKNLKDSDY DKILNQHIIIDIKGIVNKPTWRL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1L | AAA64651.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 7e-108 | 56 |
| tviB | NP_458740.1 | Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-108 | 54 |
| tviB | NP_807945.1 | VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase | Virulence | SPI-7 | Protein | 1e-108 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| CHAB381_0666 | YP_001406247.1 | VI polysaccharide biosynthesis protein VipA/tviB | VFG0431 | Protein | 6e-109 | 54 |
