Gene Information

Name : virB (CHAB381_0172)
Accession : YP_001405780.1
Strain : Campylobacter hominis ATCC BAA-381
Genome accession: NC_009714
Putative virulence/resistance : Virulence
Product : P-type DNA transfer ATPase VirB11
Function : -
COG functional category : N : Cell motility
COG ID : COG0630
EC number : -
Position : 153486 - 154472 bp
Length : 987 bp
Strand : -
Note : identified by match to protein family HMM PF00437; match to protein family HMM TIGR02788

DNA sequence : 
ATGAGCGGTATTAGAAGCAGTGTTTCATTAAGTAAATATTCAAATGAATATTTTGGAAAATATTTACAAGATGACACAAT
TAACGAAATTTGCTATAACGGTGGCACTGCTATTTTTTATGAAGATAGCAAAGGCAATTGGCATATTGATGAAAATGCAA
ATTTTGATTATGAAAAAGCAATAGCATTTGCTACTTCTTGTGCCTCTTTCAAAAAAGATCAAATAGACAAAACAAAACCA
ATACTTTCTTGTGTATTGCCAACTGGTGAGAGGGTTCAAATCGTAATACCACCAGCGACAAAAGATGGTATTGTTTCAAT
CACAATTAGAAAACCATCAAAAGTTCGATATACATTAAATGATTATATATCAAGTGGATCAATTGATAAAAATAGTGCTG
ATTTCTTTATTCAAGCCATTAAACAAGGAAAAAATATTGTCATTTGTGGCGAAACTGGAAGTGGAAAAACTACTTTAATG
AAAACTTTTATTGATTTTATTCCGCTAGATGAAAGAATTATAACCATTGAAGATGTTGAAGAAATAAGATTTTACGAACA
TAAAAACTATCAACAACTCTTTTATCCAAGCGAAGCAAAAGAAAGTGATTTTCTAAACTCAACAGCTCTTTTGAAATCTT
GCCTTAGAATGAAACCAAGCAGAATCTTGCTCGCAGAAGTTAGGGGAGCTGAAACATATGATTTTTTAAATGTTATCTCA
AGCGGACACAATGGCTCAATGACAAGTTGTCACGCAGGAAGTGTCAAAAATTGCTACAACAGACTAGCAATGATGTCTAT
GCAAAATGAAATTGCCAGATCTCTTGGTAAAGATATGATACTTGACATTATAAAAAATATCATCGATTTAGTAATAGTCT
TTAAAAAAGAGCATAACGGAATTAGGCGAGTAGCTGAATATTTATACGAACAAAAACTATATAAAAACTTTGATGGAATT
TTTAAAGAAGTTAAGGATTTTGTATGA

Protein sequence : 
MSGIRSSVSLSKYSNEYFGKYLQDDTINEICYNGGTAIFYEDSKGNWHIDENANFDYEKAIAFATSCASFKKDQIDKTKP
ILSCVLPTGERVQIVIPPATKDGIVSITIRKPSKVRYTLNDYISSGSIDKNSADFFIQAIKQGKNIVICGETGSGKTTLM
KTFIDFIPLDERIITIEDVEEIRFYEHKNYQQLFYPSEAKESDFLNSTALLKSCLRMKPSRILLAEVRGAETYDFLNVIS
SGHNGSMTSCHAGSVKNCYNRLAMMSMQNEIARSLGKDMILDIIKNIIDLVIVFKKEHNGIRRVAEYLYEQKLYKNFDGI
FKEVKDFV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0525 BAD13941.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-53 43
cag-alfa AAF80196.1 Cag-alfa Virulence cag PAI Protein 8e-53 43
virB11-2 YP_005774544.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-53 43
HP0525 BAD13886.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-53 43
HP0525 AAR03888.1 VirB11-like protein Virulence cag PAI Protein 8e-53 43
HP0525 AAR03948.1 VirB11-like protein Virulence cag PAI Protein 8e-53 43
virB11-2 YP_005777269.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-52 43
virB11 AGC69807.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-53 43
HP0525 BAD13913.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-52 43
virB11_1 NP_223192.1 cag island protein, DNA transfer protein Virulence cag PAI Protein 1e-52 43
HP0525 AAR03859.1 VirB11-like protein Virulence cag PAI Protein 1e-52 43
HP0525 NP_207321.1 virB11-like protein Virulence cag PAI Protein 1e-52 43
HP0525 BAD14024.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-53 43
virB11-4 YP_003728739.1 cag pathogenicity island protein alpha Virulence cag PAI Protein 1e-52 43
HP0525 AAR03917.1 VirB11-like protein Virulence cag PAI Protein 8e-53 43
virB11-2 YP_005779065.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-53 43
HP0525 BAD13831.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-53 43
HP0525 BAD13996.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-53 43
virB11-2 YP_005775728.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-53 43
HP0525 BAD13968.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-51 42
HP0525 BAD13777.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-53 42
HP0525 BAD13804.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-53 42
HP0525 BAD14050.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-53 42
HP0525 BAD13858.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-52 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
virB YP_001405780.1 P-type DNA transfer ATPase VirB11 VFG2218 Protein 4e-53 44
virB YP_001405780.1 P-type DNA transfer ATPase VirB11 VFG0285 Protein 4e-53 43