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Name : lysS (YpsIP31758_0883) Accession : YP_001399867.1 Strain : Yersinia pseudotuberculosis IP 31758 Genome accession: NC_009708 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1066315 - 1067832 bp Length : 1518 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCAGAGCAAAAACCACAAGTCGCTGAGCAAGCGCAAGAACTCAATAGTGAGTTACAAGCCCGTCGAGAAAAACTGGC TGTCTTACGGGGAAAGGGAATTGCATTCCCTAATGATTTCCGCCGTGAGAACCTTTCCGACCAGTTGCATGCCGAGTTTG ACAGTAAAGAGAATGAAGAGTTAGAAGCACTGAATATCGACGTAACCGTTGCTGGCCGTATGATGACCCGCCGTATCATG GGTAAAGCATCATTTGTGACTCTGCAAGATGTTGGTGGCCGTATCCAGTTGTACGTTTCCCGTGATGACCTACCGGAAGG CGTTTATAACGAAGAATTCAAAAAGTGGGACCTGGGCGATATCTTGGGTGCGCGCGGTAAACTGTTTAAAACCAAAACCG GTGAGCTGTCGATCCACTGTAGCGAACTGCGTCTGTTGACCAAGGCTCTGCGTCCATTGCCAGATAAATTCCATGGCTTA GCTGACCAGGAAACCCGTTACCGCCAGCGTTATTTGGATCTGATTGCTAACGACGAGTCTCGTCATACTTTCAAAGTCCG TTCGCAAGTGATGTCCGGTATCCGTAGCTTCATGGTTGAAAAAGGCTTCATGGAAGTCGAAACGCCAATGATGCAAGTGA TCCCTGGCGGCGCTTCCGCACGTCCGTTTGTCACGCATCACAATGCGTTGGATATCGATATGTATTTGCGTATCGCGCCA GAGTTGTATCTGAAACGTCTGGTCGTGGGGGGCTTCGAACGTGTGTTCGAAATCAACCGTAACTTCCGCAACGAAGGGGT TTCGCCACGTCATAACCCAGAGTTCACCATGATGGAACTCTATATGGCTTATGCGGACTATAAAGACCTGATCGTCTTGA CGGAAGAGCTATTCCGCACTCTGACCGAAACCATATTGGGGAGCAGTGTGGTGCAATATGGCGAACAGACTTTTGATTTC GGTAAGCCTTTTGCCAAATTGACCATGAAAGAAGCTATTTGTAAATATCGTCCTGAAACCAATGTCGCGGATTTAGACGA TATGGATAAAGCCGTCGCAATTGCCGAATCATTGGGTATCAAGGTTGAGAAGAGCTGGGGCCTGGGTCGTATTCAATGTG AAATCTTTGAAGAGACCGCAGAAAGTCATCTTATCCAGCCAACGTTCATCACAGAATATCCAGCCGAGGTTTCTCCGCTA GCACGCCGTAATGACGATAATCCATTTATCACTGACCGCTTTGAATTCTTCATCGGTGGCCGTGAAATTGGTAATGGCTT CTCTGAGTTGAACGATGCCGAAGACCAGGCGCAGCGTTTCGCCGATCAGGTAAGTGCTAAAGAAGCTGGCGATGATGAAG CGATGTTCTACGATGAAGACTATATCACTGCATTGGAACATGGCTTACCACCAACCGCAGGGCTAGGTATTGGTATTGAC CGTATGGTTATGTTGTTTACCAATAGCCATACCATCCGTGATGTCATTTTATTCCCAGCGATGCGCCCGGTAAAATAA Protein sequence : MSEQKPQVAEQAQELNSELQARREKLAVLRGKGIAFPNDFRRENLSDQLHAEFDSKENEELEALNIDVTVAGRMMTRRIM GKASFVTLQDVGGRIQLYVSRDDLPEGVYNEEFKKWDLGDILGARGKLFKTKTGELSIHCSELRLLTKALRPLPDKFHGL ADQETRYRQRYLDLIANDESRHTFKVRSQVMSGIRSFMVEKGFMEVETPMMQVIPGGASARPFVTHHNALDIDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMELYMAYADYKDLIVLTEELFRTLTETILGSSVVQYGEQTFDF GKPFAKLTMKEAICKYRPETNVADLDDMDKAVAIAESLGIKVEKSWGLGRIQCEIFEETAESHLIQPTFITEYPAEVSPL ARRNDDNPFITDRFEFFIGGREIGNGFSELNDAEDQAQRFADQVSAKEAGDDEAMFYDEDYITALEHGLPPTAGLGIGID RMVMLFTNSHTIRDVILFPAMRPVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-164 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001399867.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 6e-165 | 67 |
