Gene Information

Name : YpsIP31758_0809 (YpsIP31758_0809)
Accession : YP_001399793.1
Strain : Yersinia pseudotuberculosis IP 31758
Genome accession: NC_009708
Putative virulence/resistance : Unknown
Product : phage integrase family site specific recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 976127 - 977386 bp
Length : 1260 bp
Strand : -
Note : identified by match to protein family HMM PF00589

DNA sequence :
ATGGCACTCACCGATGTGAAAGTGCGGTCAGCAAAAACCGAAGATAAACCTTACAAACTGACTGACAGCGATGGCATGCA
TTTGCTGGTTCATCCCAATGGGTCAAAATATTGGCGGCTACGTTATCGCTACCTCGGCAAAGAAAATACCCTGGCATTGG
GCGTCTACCCTGCCCTATCACTTTCAGAAGCGCGGGCTAAACGCGACGCCGCGCGCAAATTGATTGCCGAGGGCTCCGAC
CCCAGTGAGGTCAAGCGGGCGAAAAAGGCTTTACCCGATGCCACTCAAACATTCGAAGTTATTGCCCGGCGCTGGCATGC
TGCTAATAAGCAATGGTCTGAGCAACACAGCGCAAAGGTGCTCAAAAATCTGGAAATGTATCTATTTCCTGTGAACGGTA
CTCGCGATATCGCTTCACTCAGGACACCCGACCTGCTCATCCCTATTCGGGTAGCCGAAAATGCAGGTTTTCTTGAAGTG
TCTGCCCGTCTACTGCAACGCACCACCGCCATCATGCGTTATGCCGTCCAGTGTGGGATCATCGATTACAACCCAGCTCA
GGACATGGTTGGCGCTCTTACCACGGTTAAACGCGTTCACCGGCCTGCCCTCGAACTCAATCGCATCCCTGAGTTACTAT
CACGTATTGAGGGTTATAAGGGCCAACCTCTTACTCGCCTGGCCGTGATGCTTAATCTATTCGTTTTTATTCGTTCCAGT
GAACTTCGTTATGCACGCTGGAGTGAAATCGATACAGAAAGAGCACTTTGGACCATCCCGGCTGAAAGAGAACCTATCCC
CGGAGTTAAATTCTCACACCGAGGTTCAAAGATGCGCACCACGCATCTGGTCCCACTCAGCCAGCAATCGTTAGCTATGC
TGGAAGAGCTTCGCCTTTCTGGTGGTGAGAGTGGTCTGATATTTCCCGGTGACCATGATCCTCGTAAGCCCATCAGTGAA
AACACCATCAACAAGGCATTACGTTTGATGGGGTATGAGACCAAGACGGAAGTGTGTGGCCATGGTTTCCGAGCGATGGC
GTGCAGCGCATTGATTGAGTCTGGTTTATGGTCACGGGATGCGGTGGAGCGGCAAATGAGCCATCAGGAACGTAATGGTG
TTCGGGCAGCGTACATTCACAAAGCCGAGTTTCTGGATGAGCGCAGACTGATGTTGCAATGGTGGGCAGATTTTCTGGAT
ACGAACAGAGAGATTGCAGTGAGTCCATTTGATTTTGCAAAACAGTATGTCCCACAGTAA

Protein sequence :
MALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPALSLSEARAKRDAARKLIAEGSD
PSEVKRAKKALPDATQTFEVIARRWHAANKQWSEQHSAKVLKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEV
SARLLQRTTAIMRYAVQCGIIDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIRSS
ELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELRLSGGESGLIFPGDHDPRKPISE
NTINKALRLMGYETKTEVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLD
TNREIAVSPFDFAKQYVPQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 3e-157 77
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-159 77
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-159 77
int AAK00456.1 Int Not tested SHI-1 Protein 3e-150 77
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-158 77
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-158 77
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-158 77
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-157 77
int CAC81896.1 integrase Not tested LEE II Protein 1e-148 77
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-158 76
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 9e-159 76
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-158 76
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-157 76
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-157 76
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-157 76
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-158 76
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 6e-157 76
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-157 76
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-157 76
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-157 76
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-157 76
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 4e-135 68
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-127 60
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-127 60
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 6e-112 56
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 6e-112 56
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 1e-115 55
int CAB59974.1 integrase Not tested HPI Protein 5e-106 52
int YP_002346908.1 integrase Not tested HPI Protein 9e-105 52
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 9e-105 52
int2 NP_993013.1 integrase Not tested HPI Protein 9e-105 52
int CAA08754.1 integrase Not tested HPI Protein 3e-105 52
int CAA21384.1 - Not tested HPI Protein 9e-105 52
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-73 52
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 1e-86 51
unnamed AAD17660.1 unknown Not tested HPI Protein 1e-101 51
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 4e-101 51
int AAD44730.1 Int Not tested SHI-2 Protein 4e-79 43
int CAC39282.1 integrase Not tested LPA Protein 1e-79 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 9e-80 43
int ACU09430.1 integrase Not tested LEE Protein 5e-79 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 7e-79 42
ECs4534 NP_312561.1 integrase Not tested LEE Protein 7e-79 42
int AAC31482.1 CP4-like integrase Not tested LEE Protein 5e-79 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 6e-70 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 1e-77 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 1e-77 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 1e-77 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YpsIP31758_0809 YP_001399793.1 phage integrase family site specific recombinase VFG0626 Protein 1e-159 77
YpsIP31758_0809 YP_001399793.1 phage integrase family site specific recombinase VFG1693 Protein 6e-159 77
YpsIP31758_0809 YP_001399793.1 phage integrase family site specific recombinase VFG1536 Protein 2e-135 68
YpsIP31758_0809 YP_001399793.1 phage integrase family site specific recombinase VFG0783 Protein 3e-79 42
YpsIP31758_0809 YP_001399793.1 phage integrase family site specific recombinase VFG0598 Protein 6e-78 42