Gene Information

Name : YpsIP31758_0741 (YpsIP31758_0741)
Accession : YP_001399728.1
Strain : Yersinia pseudotuberculosis IP 31758
Genome accession: NC_009708
Putative virulence/resistance : Unknown
Product : IS1 family transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1662
EC number : -
Position : 907775 - 908143 bp
Length : 369 bp
Strand : +
Note : identified by match to protein family HMM PF03400

DNA sequence : 
ATGTGGTCATTTGTGGGCAACAAAAAGCAGCAACGTTGGCTTTGGTATGCCTGGGAGCCTCGCCTCAAACGTATTATTGC
TCATGTTTTTGGTCGTCGGAGCAAAAAGACATTTCGCCAATTATTGGGGTTGCTGTCAGGTTTCAATATCGTCTTCTGGT
GTACCGACAACTTCAGTGCTTATGAGATGTTGCCGGATGAAAAACACATCAGGAGCAAGCTTTACACGCAGCGGATTGAG
CGTGAAAACCTGAATATCCGTAATCGGTTGAAACGACTGAACCGCAAGACTCTCGGAGACTCAAAGTCGGCAGAAATGCA
TAACAGGATCATCGGTACGTTCATTGAGCGTGAGCATTACCTAGTGTGA

Protein sequence : 
MWSFVGNKKQQRWLWYAWEPRLKRIIAHVFGRRSKKTFRQLLGLLSGFNIVFWCTDNFSAYEMLPDEKHIRSKLYTQRIE
RENLNIRNRLKRLNRKTLGDSKSAEMHNRIIGTFIEREHYLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
insB NP_709463.1 IS1 ORF2 Not tested SHI-2 Protein 1e-15 50
EC042_4085 YP_006098368.1 transposase Not tested Tn2411 Protein 2e-15 50
EC042_4113 YP_006098397.1 transposase Not tested Tn2411 Protein 2e-15 50
insB NP_458736.1 insertion element IS1 protein InsB Not tested SPI-7 Protein 2e-15 50
tnpH AAD44742.1 TnpH Not tested SHI-2 Protein 1e-15 50
insB NP_709451.1 IS1 ORF2 Not tested SHI-2 Protein 3e-15 50
insB ADD91744.1 transposase Not tested PAI-I AL862 Protein 1e-15 50
Z1192 NP_286727.1 IS1 protein InsB Not tested TAI Protein 2e-15 50
Z1632 NP_287135.1 IS1 protein InsB Not tested TAI Protein 2e-15 50
S4059 NP_839227.1 IS1 orfB Not tested SHI-2 Protein 2e-15 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YpsIP31758_0741 YP_001399728.1 IS1 family transposase orfB VFG0612 Protein 8e-16 50